C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GA binding protein transcription factor, beta subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000220429 GABPB1-005 ENSG00000104064 9606 - 15:50277263-50355153 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000220429
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000220429 4.585±0.00 7.288±0.00 2.199±0.00 3.358±0.00 2.866±1.05 1.268±0.50 2.725±0.00 1.791±0.29 2.715±1.08 1.519±0.28 3.596±1.10 3.592±0.81 4.708±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002E6 CIL_0002E6_0001 CGP 15:50241947-50355408
CIL_00070V CIL_00070V_0001 CGP 15:50275392-50514419

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IDA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110425 Gabpb1-001 protein_coding Mus_musculus 0 1400
ENSMUST00000103227 Gabpb1-003 protein_coding Mus_musculus 0 1382
ENSMUST00000110424 Gabpb1-004 protein_coding Mus_musculus 0 1382
ENSMUST00000089745 Gabpb1-009 protein_coding Mus_musculus 0 1072
ENSMUST00000103226 Gabpb1-008 protein_coding Mus_musculus 0 1011
ENSMUST00000039978 Gabpb1-002 protein_coding Mus_musculus 0 863
ENSMUST00000121913 Gm12858-001 processed_pseudogene Mus_musculus 0 239

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