C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GA repeat binding protein, beta 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027361 Gabpb1 10090 - 2:126627442-126676337 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039978 Gabpb1-002 126638636-126676337 protein_coding
  ENSMUST00000089745 Gabpb1-009 126647748-126675592 protein_coding
  ENSMUST00000103226 Gabpb1-008 126639021-126675486 protein_coding
  ENSMUST00000103227 Gabpb1-003 126628915-126675544 protein_coding
  ENSMUST00000110424 Gabpb1-004 126628913-126675502 protein_coding
  ENSMUST00000110425 Gabpb1-001 126627442-126675568 protein_coding
  ENSMUST00000124972 Gabpb1-005 126653615-126675352 protein_coding
  ENSMUST00000130263 Gabpb1-006 126652326-126675339 processed_transcript
  ENSMUST00000137335 Gabpb1-007 126653692-126663290 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000089745ENSMUST00000103226ENSMUST00000103227ENSMUST00000110424ENSMUST00000110425
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000089745 N/A 1.335±0.46 N/A N/A 1.458±0.00 0.668±0.18 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000103226 3.611±0.91 2.150±0.29 N/A N/A 4.021±1.46 1.698±0.25 1.859±0.42 3.356±0.61 2.709±2.23 3.753±0.37 0.656±0.14 4.666±1.34 6.414±0.98 8.773±0.63
ENSMUST00000103227 0.798±0.10 1.432±0.00 N/A N/A 1.609±0.02 1.011±0.16 0.877±0.00 N/A 0.845±0.30 N/A 0.666±0.26 1.965±0.41 1.913±0.06 2.632±0.37
ENSMUST00000110424 2.112±0.61 N/A 3.159±0.79 3.752±0.66 1.932±0.40 1.208±0.24 1.782±0.30 2.605±0.48 3.117±2.01 4.168±0.90 1.221±0.38 2.940±1.82 4.542±0.99 1.833±0.18
ENSMUST00000110425 N/A N/A N/A N/A N/A 0.679±0.32 N/A N/A 0.503±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002E6 CIL_0002E6_0002 CGP 2:126593667-126676337
CIL_00070V CIL_00070V_0002 CGP 2:126627442-126759297

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 ISO nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0044212 ISO transcription regulatory region DNA binding
GO:0045944 ISO positive regulation of transcription from RNA polymerase II promoter
GO:0046982 ISO protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089786 GA binding protein transcription factor, beta subunit 1 protein_coding Danio_rerio
ENSG00000104064 GABPB1 GA binding protein transcription factor, beta subunit 1 protein_coding Homo_sapiens

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