C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: eukaryotic translation initiation factor 3, subunit J
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104131 EIF3J 9606 + 15:44537057-44563029 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261868 EIF3J-001 44537057-44562803 protein_coding
  ENST00000424492 EIF3J-003 44537125-44561999 protein_coding
  ENST00000535391 EIF3J-002 44537183-44561447 protein_coding
  ENST00000536248 EIF3J-004 44554624-44560575 protein_coding
  ENST00000558053 EIF3J-006 44551438-44557751 retained_intron
  ENST00000558227 EIF3J-005 44550683-44554574 retained_intron
  ENST00000558353 EIF3J-007 44557505-44563029 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261868ENST00000424492ENST00000535391
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261868 5.810±0.00 7.782±0.00 4.895±2.66 6.271±0.00 3.577±0.00 4.978±2.84 5.908±3.09 5.532±2.49 5.887±0.00 7.072±4.03 6.356±1.76 8.407±0.05 10.695±0.00
ENST00000424492 11.312±0.00 8.035±0.00 10.536±0.00 12.259±0.00 6.836±0.00 13.421±0.00 20.000±0.00 13.720±0.00 11.705±0.00 21.484±0.00 12.845±0.00 13.686±1.20 19.265±0.00
ENST00000535391 13.639±0.00 N/A 16.543±0.00 N/A 16.859±0.00 N/A N/A N/A N/A 18.942±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000686 CIL_000686_0001 CGP 15:44427234-44563029
CIL_0004DI CIL_0004DI_0001 CGP 15:44537057-44663678

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001731 IEA formation of translation preinitiation complex
GO:0003743 IC:IEA translation initiation factor activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0005852 IDA:IEA eukaryotic translation initiation factor 3 complex
GO:0006412 TAS translation
GO:0006413 IC translational initiation
GO:0006446 IEA regulation of translational initiation
GO:0010467 TAS gene expression
GO:0016282 IEA eukaryotic 43S preinitiation complex
GO:0033290 IEA eukaryotic 48S preinitiation complex
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012603 eif3ja eukaryotic translation initiation factor 3, subunit Ja protein_coding Danio_rerio
ENSDARG00000053370 eif3jb eukaryotic translation initiation factor 3, subunit Jb protein_coding Danio_rerio
ENSDARG00000097988 EIF3J (3 of 3) eukaryotic translation initiation factor 3, subunit J protein_coding Danio_rerio
ENSMUSG00000027236 Eif3j1 eukaryotic translation initiation factor 3, subunit J1 protein_coding Mus_musculus
ENSMUSG00000043424 Eif3j2 eukaryotic translation initiation factor 3, subunit J2 protein_coding Mus_musculus

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