C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000686_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000137770-ENSG00000104131 CGP 9606 15:44427234-44563029
GeneTranscriptPositionBiotype
ENSG00000104131 (EIF3J)
eukaryotic translation initiation factor 3, subunit J 		ENST00000261868 (EIF3J-001) 44537057-44562803 protein_coding
ENST00000424492 (EIF3J-003) 44537125-44561999 protein_coding
ENST00000535391 (EIF3J-002) 44537183-44561447 protein_coding
ENST00000536248 (EIF3J-004) 44554624-44560575 protein_coding
ENST00000558053 (EIF3J-006) 44551438-44557751 retained_intron
ENST00000558227 (EIF3J-005) 44550683-44554574 retained_intron
ENST00000558353 (EIF3J-007) 44557505-44563029 nonsense_mediated_decay
ENSG00000104133 (SPG11)
spastic paraplegia 11 (autosomal recessive) 		ENST00000261866 (SPG11-001) 44562696-44663664 protein_coding
ENST00000427534 (SPG11-004) 44563121-44663647 protein_coding
ENST00000535302 (SPG11-002) 44562854-44663675 protein_coding
ENST00000557866 (SPG11-021) 44633470-44651644 non_stop_decay
ENST00000558080 (SPG11-026) 44573358-44575272 retained_intron
ENST00000558093 (SPG11-011) 44598354-44606158 retained_intron
ENST00000558138 (SPG11-019) 44564639-44572824 protein_coding
ENST00000558155 (SPG11-013) 44585838-44596346 nonsense_mediated_decay
ENST00000558253 (SPG11-014) 44585652-44590937 processed_transcript
ENST00000558319 (SPG11-006) 44573357-44663678 protein_coding
ENST00000558561 (SPG11-024) 44596804-44598679 retained_intron
ENST00000558790 (SPG11-015) 44584259-44590528 processed_transcript
ENST00000558988 (SPG11-023) 44600260-44610857 protein_coding
ENST00000558989 (SPG11-008) 44615428-44621866 retained_intron
ENST00000559193 (SPG11-003) 44622476-44663658 protein_coding
ENST00000559347 (SPG11-027) 44565966-44572640 processed_transcript
ENST00000559511 (SPG11-007) 44562697-44584527 protein_coding
ENST00000559754 (SPG11-010) 44600564-44610859 protein_coding
ENST00000559822 (SPG11-016) 44573734-44584451 nonsense_mediated_decay
ENST00000559933 (SPG11-017) 44570553-44573820 retained_intron
ENST00000560299 (SPG11-020) 44564553-44566144 retained_intron
ENST00000560435 (SPG11-022) 44613509-44620305 nonsense_mediated_decay
ENST00000560858 (SPG11-025) 44585762-44595273 nonsense_mediated_decay
ENST00000561268 (SPG11-018) 44567338-44573683 retained_intron
ENST00000561391 (SPG11-012) 44596116-44597172 retained_intron
ENSG00000137770 (CTDSPL2)
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 		ENST00000260327 (CTDSPL2-001) 44427234-44529038 protein_coding
ENST00000558373 (CTDSPL2-003) 44459003-44527232 protein_coding
ENST00000558791 (CTDSPL2-010) 44427622-44490804 protein_coding
ENST00000558966 (CTDSPL2-002) 44427793-44524543 protein_coding
ENST00000558968 (CTDSPL2-006) 44427814-44484314 protein_coding
ENST00000559175 (CTDSPL2-004) 44519637-44525947 retained_intron
ENST00000559738 (CTDSPL2-009) 44519224-44524436 processed_transcript
ENST00000559793 (CTDSPL2-005) 44427808-44486578 protein_coding
ENST00000560620 (CTDSPL2-008) 44497027-44521406 nonsense_mediated_decay
ENST00000560834 (CTDSPL2-011) 44427642-44484347 processed_transcript
ENST00000561189 (CTDSPL2-007) 44490992-44503879 processed_transcript
ENSG00000179523 (EIF3J-AS1)
EIF3J antisense RNA 1 (head to head) 		ENST00000313807 (EIF3J-AS1-001) 44533493-44536923 lincRNA
ENST00000558323 (EIF3J-AS1-005) 44535089-44535943 lincRNA
ENST00000559356 (EIF3J-AS1-003) 44535069-44536894 lincRNA
ENST00000560049 (EIF3J-AS1-002) 44535252-44536900 lincRNA
ENST00000560750 (EIF3J-AS1-004) 44527257-44536640 lincRNA
ENSG00000259335 (HNRNPMP1)
heterogeneous nuclear ribonucleoprotein M pseudogene 1 		ENST00000560685 (HNRNPMP1-001) 44447577-44449344 processed_pseudogene
ENSG00000259563 (CTD-2329K10.1)
 ENST00000561324 (CTD-2329K10.1-001) 44516650-44517483 antisense
ENSG00000259659 (RP11-151N17.1)
 ENST00000558006 (RP11-151N17.1-001) 44557829-44559188 sense_intronic
CIL_000686_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033411-ENSMUSG00000027236 CGP 10090 2:121956001-122056598
GeneTranscriptPositionBiotype
ENSMUSG00000027236 (Eif3j1)
eukaryotic translation initiation factor 3, subunit J1 		ENSMUST00000028668 (Eif3j1-001) 122028546-122056598 protein_coding
ENSMUST00000142747 (Eif3j1-002) 122028652-122029328 processed_transcript
ENSMUSG00000033396 (Spg11)
spastic paraplegia 11 		ENSMUST00000036450 (Spg11-001) 122053520-122118386 protein_coding
ENSMUST00000133145 (Spg11-002) 122093540-122118296 processed_transcript
ENSMUST00000135847 (Spg11-003) 122107666-122118375 processed_transcript
ENSMUSG00000033411 (Ctdspl2)
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 		ENSMUST00000036647 (Ctdspl2-001) 121956001-122013642 protein_coding
ENSMUST00000110572 (Ctdspl2-006) 121969082-122013591 protein_coding
ENSMUST00000110574 (Ctdspl2-005) 121956659-122010723 protein_coding
ENSMUST00000110578 (Ctdspl2-003) 121956411-122012388 protein_coding
ENSMUST00000127265 (Ctdspl2-009) 121978812-122003963 retained_intron
ENSMUST00000128883 (Ctdspl2-004) 121956486-121993783 processed_transcript
ENSMUST00000131258 (Ctdspl2-008) 121956486-121990394 retained_intron
ENSMUST00000138920 (Ctdspl2-007) 121956460-121994196 retained_intron
ENSMUST00000140570 (Ctdspl2-002) 121956480-122012615 processed_transcript
ENSMUSG00000074881 (Mageb3)
melanoma antigen, family B, 3 		ENSMUST00000104936 (Mageb3-001) 121953752-121956092 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000686_0001ENSG00000104131ENST00000261868ENST00000424492ENST00000535391ENSG00000104133ENST00000261866ENST00000427534ENST00000535302ENST00000558319ENST00000559193ENST00000559511ENSG00000137770ENST00000260327ENST00000558373ENST00000558966ENST00000559175ENST00000560834ENSG00000179523ENST00000313807ENST00000560750ENSG00000259335ENST00000560685ENSG00000259563ENST00000561324ENSG00000259659ENST00000558006CIL_000686_0002ENSMUSG00000027236ENSMUST00000028668ENSMUSG00000033396ENSMUST00000036450ENSMUSG00000033411ENSMUST00000036647ENSMUST00000110572ENSMUST00000110574ENSMUST00000110578ENSMUST00000131258ENSMUST00000138920ENSMUST00000140570ENSMUSG00000074881ENSMUST00000104936
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104131 ENST00000261868 5.810±0.00 7.782±0.00 N/A 4.895±2.66 6.271±0.00 3.577±0.00 4.978±2.84 5.908±3.09 5.532±2.49 5.887±0.00 7.072±4.03 6.356±1.76 8.407±0.05 10.695±0.00
ENST00000424492 11.312±0.00 8.035±0.00 N/A 10.536±0.00 12.259±0.00 6.836±0.00 13.421±0.00 20.000±0.00 13.720±0.00 11.705±0.00 21.484±0.00 12.845±0.00 13.686±1.20 19.265±0.00
ENST00000535391 13.639±0.00 N/A N/A 16.543±0.00 N/A 16.859±0.00 N/A N/A N/A N/A 18.942±0.00 N/A N/A N/A
ENST00000536248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000104133 ENST00000261866 3.640±0.00 3.336±0.00 N/A 2.048±0.56 2.509±0.71 3.594±1.37 4.734±0.00 2.836±0.91 2.628±1.22 5.366±2.70 3.717±0.00 4.003±1.10 3.742±2.09 4.975±0.00
ENST00000427534 N/A N/A 1.899±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535302 N/A N/A N/A N/A 3.161±0.00 N/A 2.158±0.00 N/A 2.298±0.00 N/A 1.115±0.00 N/A N/A N/A
ENST00000557866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558253 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558319 N/A N/A 2.486±0.00 N/A 3.591±0.00 7.122±0.00 N/A 3.755±0.00 N/A 4.579±0.00 N/A 4.936±0.00 N/A N/A
ENST00000558561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558988 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559193 N/A N/A 3.820±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559347 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559511 N/A 9.026±0.00 5.448±0.00 N/A 5.372±0.00 5.523±0.00 N/A 10.785±0.00 5.533±0.00 6.397±0.00 N/A 12.436±6.07 N/A 17.393±3.77
ENST00000559754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559933 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560299 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561391 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000137770 ENST00000260327 4.848±0.00 2.696±0.00 2.345±0.00 0.879±0.00 3.135±0.25 2.032±0.46 0.848±0.06 1.362±0.00 1.308±0.79 4.795±0.00 1.157±0.00 2.307±0.86 1.275±0.84 1.799±0.73
ENST00000558373 N/A N/A N/A N/A 1.602±0.00 1.110±0.00 1.116±0.00 1.143±0.39 0.285±0.00 N/A 0.721±0.00 1.828±0.33 1.388±0.77 3.225±1.35
ENST00000558791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558966 N/A N/A N/A 2.007±0.00 N/A N/A N/A N/A N/A 5.912±0.00 N/A 4.381±0.00 N/A 3.967±0.30
ENST00000558968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559175 N/A N/A N/A N/A N/A N/A 0.769±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000559738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560834 N/A N/A N/A N/A N/A N/A N/A 4.677±0.00 N/A N/A N/A N/A N/A N/A
ENST00000561189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000179523 ENST00000313807 N/A N/A N/A 1.199±0.00 N/A 2.311±0.00 N/A 1.989±1.10 N/A N/A N/A 3.076±0.00 1.391±0.00 N/A
ENST00000558323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.936±0.00 N/A N/A N/A
ENSG00000259335 ENST00000560685 0.016±0.00 0.050±0.00 0.154±0.00 0.030±0.02 0.058±0.02 0.335±0.31 0.070±0.02 N/A 0.098±0.00 0.134±0.00 N/A 0.097±0.09 N/A 0.022±0.01
ENSG00000259563 ENST00000561324 0.521±0.00 0.942±0.00 N/A 0.522±0.00 0.113±0.03 0.115±0.00 0.215±0.00 0.634±0.09 0.059±0.04 0.130±0.02 0.023±0.00 0.129±0.04 0.191±0.00 0.394±0.00
ENSG00000259659 ENST00000558006 0.168±0.00 0.992±0.00 N/A 0.456±0.09 0.260±0.00 0.351±0.00 0.182±0.15 0.386±0.00 0.064±0.00 0.092±0.00 N/A 0.530±0.41 0.110±0.00 0.594±0.37
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027236 ENSMUST00000028668 1.865±0.04 6.995±2.20 3.549±1.35 3.224±2.49 2.454±1.07 2.720±0.11 2.140±0.39 1.429±0.52 6.552±5.80 2.419±0.58 13.245±2.29 5.164±1.35 9.312±3.45 3.020±2.06
ENSMUST00000142747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000033396 ENSMUST00000036450 4.914±0.67 3.478±1.27 3.340±0.63 4.557±1.64 3.216±0.61 4.356±1.53 1.786±0.26 2.862±0.66 2.290±0.34 5.211±0.41 1.578±0.07 5.710±1.40 4.921±0.28 3.437±1.02
ENSMUST00000133145 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000033411 ENSMUST00000036647 0.888±0.34 0.912±0.00 1.372±0.00 2.826±0.00 0.599±0.14 0.403±0.12 0.666±0.10 0.992±0.34 2.801±1.27 1.032±0.40 0.332±0.18 0.940±0.39 2.910±1.75 1.448±0.05
ENSMUST00000110572 N/A 1.356±0.00 N/A 2.007±0.69 0.863±0.00 0.727±0.00 0.353±0.00 N/A 0.659±0.24 1.182±0.28 0.254±0.00 1.861±0.78 1.694±0.66 N/A
ENSMUST00000110574 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.901±0.85 4.736±1.92
ENSMUST00000110578 4.540±1.82 1.359±0.34 1.957±0.11 2.748±1.35 3.277±1.13 1.734±0.40 1.199±0.16 1.832±0.61 2.148±1.19 4.512±0.44 0.432±0.15 4.678±2.22 2.878±1.23 3.661±1.49
ENSMUST00000127265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131258 N/A N/A N/A N/A N/A 0.471±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138920 N/A N/A N/A N/A N/A 1.228±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140570 N/A 1.317±0.35 N/A 0.694±0.00 2.271±1.53 1.957±0.76 0.435±0.00 1.701±0.96 0.962±0.39 1.410±0.00 0.312±0.00 4.952±2.12 1.949±0.49 1.069±0.00
ENSMUSG00000074881 ENSMUST00000104936 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.743±0.35

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