C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: biogenesis of lysosomal organelles complex-1, subunit 6, pallidin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104164 BLOC1S6 9606 + 15:45587123-45615999 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000220531 BLOC1S6-001 45587123-45609711 protein_coding
  ENST00000562384 BLOC1S6-007 45587352-45606527 protein_coding
  ENST00000563000 BLOC1S6-013 45587560-45606692 processed_transcript
  ENST00000563160 BLOC1S6-016 45587746-45606695 processed_transcript
  ENST00000564310 BLOC1S6-020 45592124-45615999 nonsense_mediated_decay
  ENST00000564765 BLOC1S6-019 45587825-45606818 protein_coding
  ENST00000565216 BLOC1S6-012 45587424-45606671 protein_coding
  ENST00000565323 BLOC1S6-015 45587617-45606585 protein_coding
  ENST00000565409 BLOC1S6-018 45587785-45606601 protein_coding
  ENST00000565727 BLOC1S6-017 45587772-45606801 processed_transcript
  ENST00000566184 BLOC1S6-011 45587379-45605773 retained_intron
  ENST00000566753 BLOC1S6-002 45587355-45599562 protein_coding
  ENST00000566801 BLOC1S6-014 45587590-45605470 protein_coding
  ENST00000567461 BLOC1S6-006 45587236-45606981 protein_coding
  ENST00000567523 BLOC1S6-003 45587379-45607773 nonsense_mediated_decay
  ENST00000567740 BLOC1S6-005 45587214-45607046 processed_transcript
  ENST00000568597 BLOC1S6-010 45587376-45606607 nonsense_mediated_decay
  ENST00000568816 BLOC1S6-004 45587591-45609710 protein_coding
  ENST00000568963 BLOC1S6-008 45587352-45606529 nonsense_mediated_decay
  ENST00000569076 BLOC1S6-009 45587353-45606486 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000220531ENST00000566753
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000220531 6.614±0.00 5.049±0.00 3.397±0.00 3.610±1.23 4.380±1.35 4.022±0.51 2.480±0.40 2.658±0.56 3.077±0.40 4.083±0.87 3.250±0.00 6.626±2.05 4.717±4.19 5.000±2.35
ENST00000566753 N/A N/A 8.044±0.00 7.175±0.00 11.243±0.00 8.698±0.00 9.613±0.00 6.310±0.00 12.623±0.00 11.449±0.00 2.589±0.00 14.366±0.00 N/A 8.092±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004QN CIL_0004QN_0002 CGP 15:45479611-45615999
CIL_0004NC CIL_0004NC_0001 CGP 15:45587123-45676314

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005768 IEA endosome
GO:0005829 TAS cytosol
GO:0006892 TAS post-Golgi vesicle-mediated transport
GO:0007596 IEA blood coagulation
GO:0008089 ISS anterograde axon cargo transport
GO:0016081 NAS synaptic vesicle docking involved in exocytosis
GO:0019898 IDA extrinsic component of membrane
GO:0019905 TAS syntaxin binding
GO:0030133 IDA transport vesicle
GO:0030318 IEA melanocyte differentiation
GO:0031083 IDA BLOC-1 complex
GO:0031175 ISS neuron projection development
GO:0031201 IDA SNARE complex
GO:0032402 IDA melanosome transport
GO:0032438 NAS melanosome organization
GO:0032816 IEA positive regulation of natural killer cell activation
GO:0033299 IEA secretion of lysosomal enzymes
GO:0035646 IDA endosome to melanosome transport
GO:0042802 IPI identical protein binding
GO:0042803 IDA protein homodimerization activity
GO:0043473 IEA pigmentation
GO:0048490 ISS anterograde synaptic vesicle transport
GO:0050942 IDA positive regulation of pigment cell differentiation
GO:0051015 IDA actin filament binding
GO:0061024 TAS membrane organization
GO:0061025 IEA membrane fusion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042933 bloc1s6 biogenesis of lysosomal organelles complex-1, subunit 6, pallidin protein_coding Danio_rerio
ENSMUSG00000005804 Bloc1s6 biogenesis of lysosomal organelles complex-1, subunit 6, pallidin protein_coding Mus_musculus

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