C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: biogenesis of lysosomal organelles complex-1, subunit 6, pallidin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000220531 BLOC1S6-001 ENSG00000104164 9606 + 15:45587123-45609711 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000220531
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000220531 6.614±0.00 5.049±0.00 3.397±0.00 3.610±1.23 4.380±1.35 4.022±0.51 2.480±0.40 2.658±0.56 3.077±0.40 4.083±0.87 3.250±0.00 6.626±2.05 4.717±4.19 5.000±2.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004QN CIL_0004QN_0002 CGP 15:45479611-45615999
CIL_0004NC CIL_0004NC_0001 CGP 15:45587123-45676314

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005768 IEA endosome
GO:0005829 TAS cytosol
GO:0006892 TAS post-Golgi vesicle-mediated transport
GO:0007596 IEA blood coagulation
GO:0008089 ISS anterograde axon cargo transport
GO:0016081 NAS synaptic vesicle docking involved in exocytosis
GO:0019898 IDA extrinsic component of membrane
GO:0019905 TAS syntaxin binding
GO:0030133 IDA transport vesicle
GO:0030318 IEA melanocyte differentiation
GO:0031083 IDA BLOC-1 complex
GO:0031175 ISS neuron projection development
GO:0031201 IDA SNARE complex
GO:0032402 IDA melanosome transport
GO:0032438 NAS melanosome organization
GO:0032816 IEA positive regulation of natural killer cell activation
GO:0033299 IEA secretion of lysosomal enzymes
GO:0035646 IDA endosome to melanosome transport
GO:0042802 IPI identical protein binding
GO:0042803 IDA protein homodimerization activity
GO:0043473 IEA pigmentation
GO:0048490 ISS anterograde synaptic vesicle transport
GO:0050942 IDA positive regulation of pigment cell differentiation
GO:0051015 IDA actin filament binding
GO:0061024 TAS membrane organization
GO:0061025 IEA membrane fusion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005954 Bloc1s6-001 protein_coding Mus_musculus 0 455
ENSMUST00000148460 Bloc1s6-002 processed_transcript Mus_musculus 0 429
ENSMUST00000129690 Bloc1s6-006 processed_transcript Mus_musculus 0 396
ENSMUST00000145037 Bloc1s6-005 processed_transcript Mus_musculus 0 263
ENSMUST00000127595 Bloc1s6-003 processed_transcript Mus_musculus 0 233

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