C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: biogenesis of lysosomal organelles complex-1, subunit 6, pallidin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000005804 Bloc1s6 10090 + 2:122738503-122749475 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000005954 Bloc1s6-001 122738503-122749475 protein_coding
  ENSMUST00000127595 Bloc1s6-003 122738513-122745980 processed_transcript
  ENSMUST00000129690 Bloc1s6-006 122738559-122747006 processed_transcript
  ENSMUST00000145037 Bloc1s6-005 122738530-122746046 processed_transcript
  ENSMUST00000146449 Bloc1s6-004 122738527-122739159 processed_transcript
  ENSMUST00000148460 Bloc1s6-002 122738519-122748099 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005954ENSMUST00000127595ENSMUST00000129690ENSMUST00000145037ENSMUST00000148460
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005954 1.899±0.11 2.551±0.77 1.097±0.00 1.466±0.00 2.205±0.44 3.307±0.68 1.465±0.05 2.888±0.26 2.230±0.30 2.229±0.20 N/A 2.216±0.86 3.047±0.19 N/A
ENSMUST00000127595 N/A 9.871±0.00 N/A N/A N/A 8.062±0.00 N/A N/A N/A N/A N/A N/A N/A 11.567±2.28
ENSMUST00000129690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.048±0.14 N/A N/A 2.759±0.00
ENSMUST00000145037 13.944±0.36 18.425±4.07 N/A N/A 12.453±3.19 16.512±4.10 N/A N/A 5.030±0.00 9.543±0.62 N/A 13.439±1.85 43.793±1.76 9.953±0.00
ENSMUST00000148460 11.862±1.98 8.528±1.07 14.978±2.74 16.607±7.53 11.694±2.89 8.628±3.90 11.436±0.72 10.324±1.61 7.776±2.05 9.779±1.81 6.269±1.09 13.631±4.53 7.392±2.82 7.056±3.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004QN CIL_0004QN_0003 CGP 2:122681233-122749475
CIL_0004NC CIL_0004NC_0002 CGP 2:122738503-122809569

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 ISS cytoplasm
GO:0005768 IDA endosome
GO:0006904 TAS vesicle docking involved in exocytosis
GO:0006906 TAS vesicle fusion
GO:0007596 IMP blood coagulation
GO:0008089 IMP anterograde axon cargo transport
GO:0019898 ISS extrinsic component of membrane
GO:0030133 ISS transport vesicle
GO:0030318 IMP melanocyte differentiation
GO:0031083 ISS BLOC-1 complex
GO:0031175 IMP neuron projection development
GO:0031201 ISS SNARE complex
GO:0032402 ISS melanosome transport
GO:0032816 IMP positive regulation of natural killer cell activation
GO:0033299 IMP secretion of lysosomal enzymes
GO:0035646 ISS endosome to melanosome transport
GO:0042802 IEA identical protein binding
GO:0042803 ISS protein homodimerization activity
GO:0043473 IMP pigmentation
GO:0048490 IMP anterograde synaptic vesicle transport
GO:0050942 ISS positive regulation of pigment cell differentiation
GO:0051015 ISS actin filament binding
GO:0061025 IPI membrane fusion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042933 bloc1s6 biogenesis of lysosomal organelles complex-1, subunit 6, pallidin protein_coding Danio_rerio
ENSG00000104164 BLOC1S6 biogenesis of lysosomal organelles complex-1, subunit 6, pallidin protein_coding Homo_sapiens

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