C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromatin accessibility complex 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104472 CHRAC1 9606 + 8:140511298-140517137 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000220913 CHRAC1-001 140511298-140517137 protein_coding
  ENST00000518971 CHRAC1-003 140511918-140515185 protein_coding
  ENST00000519533 CHRAC1-002 140511311-140516467 protein_coding
  ENST00000519618 CHRAC1-004 140511982-140515765 protein_coding
  ENST00000523569 CHRAC1-005 140514294-140515541 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000220913ENST00000519533ENST00000519618ENST00000523569
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000220913 4.100±0.00 4.395±0.00 1.060±0.00 1.352±0.00 2.376±0.23 2.257±0.14 3.083±1.67 2.788±0.44 1.975±0.38 3.304±0.76 3.484±2.87 5.827±1.50 5.884±2.34 5.040±2.16
ENST00000519533 6.236±0.00 4.897±0.00 N/A N/A 3.524±0.00 3.442±0.00 4.288±0.00 3.157±2.17 1.229±0.00 2.315±0.00 3.215±2.26 1.812±0.00 N/A 8.339±0.00
ENST00000519618 N/A N/A 1.619±0.00 1.133±0.00 3.281±0.00 1.146±0.00 0.907±0.00 N/A 2.702±0.00 2.564±0.00 N/A 6.806±2.21 N/A N/A
ENST00000523569 5.995±0.00 4.796±0.00 0.847±0.00 1.968±0.00 N/A N/A N/A N/A 1.379±0.00 N/A 1.509±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002Y5 CIL_0002Y5_0001 CGP 8:139730343-140517137
CIL_0002XO CIL_0002XO_0001 CGP 8:140511298-140635619

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 NAS DNA binding
GO:0003887 NAS DNA-directed DNA polymerase activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0006338 NAS chromatin remodeling
GO:0008622 NAS epsilon DNA polymerase complex
GO:0008623 NAS CHRAC
GO:0043565 IEA sequence-specific DNA binding
GO:0046982 IEA protein heterodimerization activity
GO:0071897 IEA DNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042337 chrac1 chromatin accessibility complex 1 protein_coding Danio_rerio
ENSMUSG00000068391 Chrac1 chromatin accessibility complex 1 protein_coding Mus_musculus

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