C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002Y5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000167632-ENSG00000104472 CGP 9606 8:139730343-140517137
GeneTranscriptPositionBiotype
ENSG00000104472 (CHRAC1)
chromatin accessibility complex 1 		ENST00000220913 (CHRAC1-001) 140511298-140517137 protein_coding
ENST00000518971 (CHRAC1-003) 140511918-140515185 protein_coding
ENST00000519533 (CHRAC1-002) 140511311-140516467 protein_coding
ENST00000519618 (CHRAC1-004) 140511982-140515765 protein_coding
ENST00000523569 (CHRAC1-005) 140514294-140515541 retained_intron
ENSG00000250733 (C8orf17)
chromosome 8 open reading frame 17 		ENST00000507535 (C8orf17-001) 139931172-139933942 TEC
ENST00000625034 (C8orf17-201) 139931172-139933946 TEC
ENSG00000253574 (RP11-284H18.1)
 ENST00000518354 (RP11-284H18.1-002) 139911238-139916620 antisense
ENST00000521883 (RP11-284H18.1-001) 139914799-139916620 antisense
ENSG00000259891 (CTA-204B4.2)
 ENST00000564464 (CTA-204B4.2-001) 140505813-140508043 antisense
ENSG00000274064 (RP11-570L14.1)
 ENST00000617244 (RP11-570L14.1-001) 140039756-140041037 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0002Y5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000047921-ENSMUSG00000068391 CGP 10090 15:72589621-73097554
GeneTranscriptPositionBiotype
ENSMUSG00000036698 (Ago2)
argonaute RISC catalytic subunit 2 		ENSMUST00000044113 (Ago2-001) 73095844-73184840 protein_coding
ENSMUSG00000047921 (Trappc9)
trafficking protein particle complex 9 		ENSMUST00000023276 (Trappc9-201) 72589621-73055812 protein_coding
ENSMUST00000089770 (Trappc9-202) 72589621-73061204 protein_coding
ENSMUST00000168191 (Trappc9-203) 72852169-73061204 protein_coding
ENSMUST00000170633 (Trappc9-204) 72799524-73061204 protein_coding
ENSMUSG00000068391 (Chrac1)
chromatin accessibility complex 1 		ENSMUST00000089765 (Chrac1-001) 73090392-73094075 protein_coding
ENSMUST00000134353 (Chrac1-003) 73090392-73097554 protein_coding
ENSMUST00000137698 (Chrac1-002) 73090412-73094774 retained_intron
ENSMUSG00000096173 (Gm3150)
predicted gene 3150 		ENSMUST00000166418 (Gm3150-001) 72913357-72913560 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002Y5_0001ENSG00000104472ENST00000220913ENST00000518971ENST00000519533ENST00000519618ENST00000523569ENSG00000250733ENST00000507535ENST00000625034ENSG00000253574ENST00000518354ENST00000521883ENSG00000259891ENST00000564464ENSG00000274064ENST00000617244CIL_0002Y5_0002ENSMUSG00000036698ENSMUST00000044113ENSMUSG00000047921ENSMUST00000023276ENSMUST00000089770ENSMUST00000168191ENSMUST00000170633ENSMUSG00000068391ENSMUST00000089765ENSMUST00000134353ENSMUST00000137698ENSMUSG00000096173ENSMUST00000166418
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002Y5_0001ENSG00000104472ENST00000220913ENST00000519533ENST00000519618ENST00000523569ENSG00000250733ENST00000507535ENST00000625034ENSG00000253574ENST00000518354ENST00000521883ENSG00000259891ENST00000564464ENSG00000274064ENST00000617244CIL_0002Y5_0002ENSMUSG00000036698ENSMUST00000044113ENSMUSG00000047921ENSMUST00000023276ENSMUST00000089770ENSMUSG00000068391ENSMUST00000089765ENSMUSG00000096173ENSMUST00000166418
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104472 ENST00000220913 4.100±0.00 4.395±0.00 1.060±0.00 1.352±0.00 2.376±0.23 2.257±0.14 3.083±1.67 2.788±0.44 1.975±0.38 3.304±0.76 3.484±2.87 5.827±1.50 5.884±2.34 5.040±2.16
ENST00000518971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519533 6.236±0.00 4.897±0.00 N/A N/A 3.524±0.00 3.442±0.00 4.288±0.00 3.157±2.17 1.229±0.00 2.315±0.00 3.215±2.26 1.812±0.00 N/A 8.339±0.00
ENST00000519618 N/A N/A 1.619±0.00 1.133±0.00 3.281±0.00 1.146±0.00 0.907±0.00 N/A 2.702±0.00 2.564±0.00 N/A 6.806±2.21 N/A N/A
ENST00000523569 5.995±0.00 4.796±0.00 0.847±0.00 1.968±0.00 N/A N/A N/A N/A 1.379±0.00 N/A 1.509±0.00 N/A N/A N/A
ENSG00000250733 ENST00000507535 0.014±0.00 0.070±0.00 0.018±0.00 0.028±0.00 0.097±0.07 0.128±0.12 0.011±0.00 0.006±0.00 0.032±0.03 0.013±0.00 N/A 0.041±0.05 N/A 0.010±0.00
ENST00000625034 0.014±0.00 0.057±0.00 0.018±0.00 0.028±0.00 0.097±0.07 0.081±0.08 0.011±0.00 0.006±0.00 0.032±0.03 0.013±0.00 N/A 0.041±0.05 N/A 0.010±0.00
ENSG00000253574 ENST00000518354 N/A N/A N/A N/A N/A N/A N/A 0.187±0.00 N/A N/A N/A N/A N/A 0.215±0.00
ENST00000521883 N/A N/A N/A N/A 0.249±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259891 ENST00000564464 0.940±0.00 1.374±0.00 0.166±0.00 1.756±1.19 0.776±0.37 0.450±0.30 0.340±0.24 0.659±0.00 0.260±0.09 0.405±0.35 0.240±0.22 0.901±0.73 0.453±0.17 1.569±0.70
ENSG00000274064 ENST00000617244 0.086±0.00 0.234±0.00 0.143±0.00 0.168±0.00 0.073±0.03 0.111±0.00 0.040±0.03 0.105±0.00 0.011±0.00 0.024±0.00 0.044±0.00 0.056±0.02 N/A 0.131±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036698 ENSMUST00000044113 8.393±2.99 9.364±0.93 4.870±2.21 6.775±2.52 7.301±4.53 10.983±3.14 5.623±0.14 7.320±0.36 6.387±3.66 9.459±1.47 6.544±0.39 7.968±3.37 7.686±3.75 3.581±0.07
ENSMUSG00000047921 ENSMUST00000023276 N/A 9.063±0.78 1.847±0.09 N/A 4.080±0.16 3.115±0.94 N/A 3.657±0.46 1.064±0.53 N/A 4.687±1.45 4.074±1.14 1.239±0.12 N/A
ENSMUST00000089770 10.324±0.96 19.909±1.52 6.762±0.50 8.836±2.01 10.681±4.16 6.492±1.04 5.876±0.74 11.341±2.98 2.002±0.88 8.729±0.84 3.114±1.30 17.509±3.36 4.225±1.24 19.307±6.90
ENSMUST00000168191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000068391 ENSMUST00000089765 26.131±0.59 33.996±1.78 32.016±4.51 16.738±4.89 32.012±7.54 22.610±2.90 32.017±3.68 32.955±1.69 26.652±7.78 26.222±0.92 36.902±2.61 35.165±4.55 23.319±5.22 207.562±49.31
ENSMUST00000134353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000096173 ENSMUST00000166418 2.957±0.32 N/A 0.267±0.00 N/A N/A N/A N/A N/A 0.229±0.00 N/A 0.463±0.00 5.300±0.00 0.467±0.09 N/A

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