C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromatin accessibility complex 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000220913 CHRAC1-001 ENSG00000104472 9606 + 8:140511298-140517137 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000220913
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000220913 4.100±0.00 4.395±0.00 1.060±0.00 1.352±0.00 2.376±0.23 2.257±0.14 3.083±1.67 2.788±0.44 1.975±0.38 3.304±0.76 3.484±2.87 5.827±1.50 5.884±2.34 5.040±2.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002Y5 CIL_0002Y5_0001 CGP 8:139730343-140517137
CIL_0002XO CIL_0002XO_0001 CGP 8:140511298-140635619

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 NAS DNA binding
GO:0003887 NAS DNA-directed DNA polymerase activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0006338 NAS chromatin remodeling
GO:0008622 NAS epsilon DNA polymerase complex
GO:0008623 NAS CHRAC
GO:0043565 IEA sequence-specific DNA binding
GO:0046982 IEA protein heterodimerization activity
GO:0071897 IEA DNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000089765 Chrac1-001 protein_coding Mus_musculus 0 409
ENSMUST00000134353 Chrac1-003 protein_coding Mus_musculus 0 307
ENSMUST00000137698 Chrac1-002 retained_intron Mus_musculus 0 303

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