C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: exoribonuclease 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104626 ERI1 9606 + 8:9002147-9116746 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000250263 ERI1-201 9002804-9033339 protein_coding
  ENST00000518663 ERI1-006 9016332-9116746 processed_transcript
  ENST00000519292 ERI1-005 9002844-9033338 protein_coding
  ENST00000520332 ERI1-007 9011663-9100099 processed_transcript
  ENST00000520684 ERI1-003 9002929-9018300 nonsense_mediated_decay
  ENST00000521844 ERI1-002 9002891-9008022 nonsense_mediated_decay
  ENST00000522258 ERI1-009 9049818-9100101 processed_transcript
  ENST00000522612 ERI1-008 9020413-9100099 processed_transcript
  ENST00000523898 ERI1-001 9002147-9033341 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000250263ENST00000519292ENST00000521844ENST00000523898
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000250263 2.497±0.00 1.597±0.00 0.515±0.00 0.501±0.10 2.009±0.13 1.296±0.12 0.551±0.13 1.495±0.14 1.326±0.39 1.488±0.47 0.361±0.19 1.916±0.33 2.968±1.08 5.074±0.00
ENST00000519292 2.088±0.00 1.800±0.00 N/A 0.703±0.00 1.662±0.00 1.096±0.00 0.551±0.00 1.193±0.00 0.411±0.00 0.692±0.00 N/A 1.367±0.50 1.629±0.61 4.894±1.74
ENST00000521844 N/A N/A N/A 1.287±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.347±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00006X CIL_00006X_0002 CGP 8:8783354-9116746
CIL_00006W CIL_00006W_0002 CGP 8:9002147-9151574

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0004527 IEA exonuclease activity
GO:0005634 ISS nucleus
GO:0005730 ISS nucleolus
GO:0005737 ISS cytoplasm
GO:0008408 IDA 3'-5' exonuclease activity
GO:0019843 ISS rRNA binding
GO:0031047 IEA gene silencing by RNA
GO:0031125 ISS rRNA 3'-end processing
GO:0043022 ISS ribosome binding
GO:0046872 IEA metal ion binding
GO:0071204 ISS histone pre-mRNA 3'end processing complex
GO:0071207 ISS histone pre-mRNA stem-loop binding
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044692 eri1 exoribonuclease 1 protein_coding Danio_rerio
ENSMUSG00000031527 Eri1 exoribonuclease 1 protein_coding Mus_musculus

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