C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: exoribonuclease 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000519292 ERI1-005 ENSG00000104626 9606 + 8:9002844-9033338 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000519292
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000519292 2.088±0.00 1.800±0.00 0.703±0.00 1.662±0.00 1.096±0.00 0.551±0.00 1.193±0.00 0.411±0.00 0.692±0.00 1.367±0.50 1.629±0.61 4.894±1.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00006X CIL_00006X_0002 CGP 8:8783354-9116746
CIL_00006W CIL_00006W_0002 CGP 8:9002147-9151574

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0004527 IEA exonuclease activity
GO:0005634 ISS nucleus
GO:0005730 ISS nucleolus
GO:0005737 ISS cytoplasm
GO:0008408 IDA 3'-5' exonuclease activity
GO:0019843 ISS rRNA binding
GO:0031047 IEA gene silencing by RNA
GO:0031125 ISS rRNA 3'-end processing
GO:0043022 ISS ribosome binding
GO:0046872 IEA metal ion binding
GO:0071204 ISS histone pre-mRNA 3'end processing complex
GO:0071207 ISS histone pre-mRNA stem-loop binding
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033927 Eri1-201 protein_coding Mus_musculus 0 935

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