C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear RNA activating complex, polypeptide 2, 45kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104976 SNAPC2 9606 + 19:7920316-7923250 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000221573 SNAPC2-001 7920316-7923250 protein_coding
  ENST00000593598 SNAPC2-004 7920837-7921746 processed_transcript
  ENST00000595035 SNAPC2-003 7921013-7922193 processed_transcript
  ENST00000595637 SNAPC2-006 7920387-7922657 protein_coding
  ENST00000596520 SNAPC2-005 7921318-7922197 processed_transcript
  ENST00000597584 SNAPC2-002 7921015-7923250 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000221573ENST00000593598ENST00000595637ENST00000596520ENST00000597584
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000221573 4.884±0.00 5.858±0.00 N/A 7.603±0.00 5.606±0.00 12.520±0.00 3.530±0.00 5.407±0.00 2.964±0.00 10.259±0.00 2.861±0.83 7.473±4.56 6.276±4.06 14.145±6.03
ENST00000593598 N/A N/A N/A N/A N/A N/A N/A 3.017±0.00 N/A N/A N/A N/A N/A N/A
ENST00000595637 N/A N/A 0.274±0.00 N/A N/A 0.711±0.00 N/A N/A N/A N/A N/A 1.017±0.00 N/A N/A
ENST00000596520 N/A N/A 1.014±0.00 N/A 1.499±0.00 N/A N/A N/A N/A N/A N/A 3.715±1.46 9.880±0.00 9.646±0.00
ENST00000597584 7.788±0.00 8.426±0.00 N/A 2.003±0.00 1.932±1.87 5.807±5.28 N/A 2.217±2.16 1.023±0.00 1.353±0.90 N/A 11.067±7.77 5.225±1.33 12.205±5.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002VS CIL_0002VS_0001 CGP 19:7916145-7923250
CIL_0001M4 CIL_0001M4_0001 CGP 19:7920316-7926166

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0009301 TAS snRNA transcription
GO:0010467 TAS gene expression

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036473 SNAPC2 small nuclear RNA activating complex, polypeptide 2, 45kDa protein_coding Danio_rerio
ENSMUSG00000011837 Snapc2 small nuclear RNA activating complex, polypeptide 2 protein_coding Mus_musculus

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