C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear RNA activating complex, polypeptide 2, 45kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000221573 SNAPC2-001 ENSG00000104976 9606 + 19:7920316-7923250 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000221573
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000221573 4.884±0.00 5.858±0.00 7.603±0.00 5.606±0.00 12.520±0.00 3.530±0.00 5.407±0.00 2.964±0.00 10.259±0.00 2.861±0.83 7.473±4.56 6.276±4.06 14.145±6.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002VS CIL_0002VS_0001 CGP 19:7916145-7923250
CIL_0001M4 CIL_0001M4_0001 CGP 19:7920316-7926166

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0009301 TAS snRNA transcription
GO:0010467 TAS gene expression

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000011981 Snapc2-201 protein_coding Mus_musculus 0 202

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