C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0002VS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000260001-ENSG00000104976 CGP 9606 19:7916145-7923250
GeneTranscriptPositionBiotype
ENSG00000104976 (SNAPC2)
small nuclear RNA activating complex, polypeptide 2, 45kDa
ENST00000221573 (SNAPC2-001) 7920316-7923250 protein_coding
ENST00000593598 (SNAPC2-004) 7920837-7921746 processed_transcript
ENST00000595035 (SNAPC2-003) 7921013-7922193 processed_transcript
ENST00000595637 (SNAPC2-006) 7920387-7922657 protein_coding
ENST00000596520 (SNAPC2-005) 7921318-7922197 processed_transcript
ENST00000597584 (SNAPC2-002) 7921015-7923250 protein_coding
ENSG00000260001 (TGFBR3L)
transforming growth factor, beta receptor III-like
ENST00000564348 (TGFBR3L-004) 7916956-7919093 processed_transcript
ENST00000565886 (TGFBR3L-002) 7916145-7919097 protein_coding
ENST00000566166 (TGFBR3L-001) 7917628-7919090 retained_intron
ENSG00000260500 (CTD-3193O13.1)
ENST00000564226 (CTD-3193O13.1-001) 7918652-7919157 antisense
CIL_0002VS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000089736-ENSMUSG00000011837 CGP 10090 8:4248214-4256219
GeneTranscriptPositionBiotype
ENSMUSG00000011837 (Snapc2)
small nuclear RNA activating complex, polypeptide 2
ENSMUST00000011981 (Snapc2-201) 4253102-4256219 protein_coding
ENSMUSG00000089736 (Gm14378)
transforming growth factor, beta receptor III-like
ENSMUST00000110993 (Gm14378-001) 4248214-4251423 protein_coding
ENSMUST00000124750 (Gm14378-002) 4248633-4249521 processed_transcript
ENSMUST00000142865 (Gm14378-003) 4250329-4251423 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002VS_0001ENSG00000104976ENST00000221573ENST00000593598ENST00000595035ENST00000595637ENST00000596520ENST00000597584ENSG00000260001ENST00000564348ENST00000565886ENST00000566166ENSG00000260500ENST00000564226CIL_0002VS_0002ENSMUSG00000011837ENSMUST00000011981ENSMUSG00000089736ENSMUST00000110993ENSMUST00000124750ENSMUST00000142865
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002VS_0001ENSG00000104976ENST00000221573ENST00000593598ENST00000595637ENST00000596520ENST00000597584ENSG00000260001ENST00000564348ENST00000565886ENST00000566166ENSG00000260500ENST00000564226CIL_0002VS_0002ENSMUSG00000011837ENSMUST00000011981ENSMUSG00000089736ENSMUST00000110993
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104976 ENST00000221573 4.884±0.00 5.858±0.00 N/A 7.603±0.00 5.606±0.00 12.520±0.00 3.530±0.00 5.407±0.00 2.964±0.00 10.259±0.00 2.861±0.83 7.473±4.56 6.276±4.06 14.145±6.03
ENST00000593598 N/A N/A N/A N/A N/A N/A N/A 3.017±0.00 N/A N/A N/A N/A N/A N/A
ENST00000595035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000595637 N/A N/A 0.274±0.00 N/A N/A 0.711±0.00 N/A N/A N/A N/A N/A 1.017±0.00 N/A N/A
ENST00000596520 N/A N/A 1.014±0.00 N/A 1.499±0.00 N/A N/A N/A N/A N/A N/A 3.715±1.46 9.880±0.00 9.646±0.00
ENST00000597584 7.788±0.00 8.426±0.00 N/A 2.003±0.00 1.932±1.87 5.807±5.28 N/A 2.217±2.16 1.023±0.00 1.353±0.90 N/A 11.067±7.77 5.225±1.33 12.205±5.68
ENSG00000260001 ENST00000564348 N/A N/A N/A N/A N/A 0.526±0.00 N/A N/A N/A 0.259±0.00 0.512±0.00 N/A N/A 0.110±0.00
ENST00000565886 N/A N/A N/A 1.149±0.00 0.220±0.00 0.165±0.00 N/A 0.336±0.00 0.462±0.00 N/A 1.267±0.99 N/A 0.215±0.00 0.075±0.00
ENST00000566166 N/A 0.323±0.00 N/A 0.692±0.39 0.475±0.00 N/A 0.771±0.00 N/A N/A 0.573±0.00 1.199±0.00 N/A 1.225±0.87 N/A
ENSG00000260500 ENST00000564226 N/A 0.207±0.00 N/A 2.300±0.00 0.320±0.00 0.334±0.12 0.566±0.00 0.705±0.00 N/A 0.583±0.00 0.616±0.00 0.243±0.08 1.002±0.83 0.613±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000011837 ENSMUST00000011981 22.335±7.60 31.309±2.43 22.116±0.83 22.157±11.85 16.907±1.87 17.703±1.63 9.694±1.24 15.584±0.90 9.617±1.19 13.803±0.80 4.718±0.46 34.533±14.73 10.027±5.91 7.020±2.91
ENSMUSG00000089736 ENSMUST00000110993 N/A 21.226±4.61 N/A 17.148±0.00 10.946±2.12 12.348±2.46 N/A N/A 5.541±0.50 N/A N/A 32.126±5.73 N/A N/A
ENSMUST00000124750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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