C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox A5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000106004 HOXA5 9606 - 7:27141052-27143668 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000222726 HOXA5-001 27141052-27143668 protein_coding
  ENST00000520854 HOXA5-002 27141807-27142775 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000222726ENST00000520854
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000222726 1.234±0.00 5.326±0.00 2.457±0.00 4.078±2.23 4.910±1.21 0.044±0.00 5.781±5.74 1.093±0.97 7.167±2.77 1.834±0.31 1.766±1.43 0.189±0.08 1.783±1.43
ENST00000520854 N/A N/A N/A N/A N/A N/A N/A 0.320±0.00 11.205±0.00 2.308±0.00 1.561±0.65 0.702±0.62 0.776±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581
CIL_0003PB CIL_0003PB_0001 CGP 7:27128507-27143668
CIL_0003PC CIL_0003PC_0001 CGP 7:27141052-27150603

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IEA skeletal system development
GO:0002009 IEA morphogenesis of an epithelium
GO:0003016 IEA respiratory system process
GO:0003677 IDA:IEA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007389 IEA pattern specification process
GO:0007585 IEA respiratory gaseous exchange
GO:0009952 IEA anterior/posterior pattern specification
GO:0010870 IDA positive regulation of receptor biosynthetic process
GO:0016477 IEA cell migration
GO:0016525 IMP negative regulation of angiogenesis
GO:0030324 IEA lung development
GO:0030878 IEA thyroid gland development
GO:0033599 IEA regulation of mammary gland epithelial cell proliferation
GO:0035264 IEA multicellular organism growth
GO:0043065 IDA positive regulation of apoptotic process
GO:0043565 IEA sequence-specific DNA binding
GO:0045639 IDA positive regulation of myeloid cell differentiation
GO:0045647 IDA negative regulation of erythrocyte differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048286 IEA lung alveolus development
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048706 IEA embryonic skeletal system development
GO:0060435 IEA bronchiole development
GO:0060439 IEA trachea morphogenesis
GO:0060441 IEA epithelial tube branching involved in lung morphogenesis
GO:0060480 IEA lung goblet cell differentiation
GO:0060481 IEA lobar bronchus epithelium development
GO:0060484 IEA lung-associated mesenchyme development
GO:0060535 IEA trachea cartilage morphogenesis
GO:0060536 IEA cartilage morphogenesis
GO:0060574 IEA intestinal epithelial cell maturation
GO:0060638 IEA mesenchymal-epithelial cell signaling
GO:0060644 IEA mammary gland epithelial cell differentiation
GO:0060749 IEA mammary gland alveolus development
GO:0060764 IEA cell-cell signaling involved in mammary gland development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000001784 hoxa5a homeo box A5a protein_coding Danio_rerio
ENSMUSG00000038253 Hoxa5 homeobox A5 protein_coding Mus_musculus

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