C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000520854 HOXA5-002 ENSG00000106004 9606 - 7:27141807-27142775 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverLungMuscleOvaryPlacentaTestisENST00000520854
Transcript ID Liver Lung Muscle Ovary Placenta Testis
ENST00000520854 0.320±0.00 11.205±0.00 2.308±0.00 1.561±0.65 0.702±0.62 0.776±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581
CIL_0003PB CIL_0003PB_0001 CGP 7:27128507-27143668
CIL_0003PC CIL_0003PC_0001 CGP 7:27141052-27150603

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000048794 Hoxa5-001 protein_coding Mus_musculus 0 396
ENSMUST00000049352 Hoxb7-001 protein_coding Mus_musculus 4e-27 124
ENSMUST00000000704 Hoxb6-201 protein_coding Mus_musculus 9e-24 113
ENSMUST00000173432 Hoxb6-001 protein_coding Mus_musculus 9e-24 113
ENSMUST00000168043 Hoxb8-201 protein_coding Mus_musculus 9e-24 113
ENSMUST00000052650 Hoxb8-001 protein_coding Mus_musculus 9e-24 113
ENSMUST00000151596 Hoxb7-002 processed_transcript Mus_musculus 0.00000000000009 81
ENSMUST00000125410 Hoxb8-002 protein_coding Mus_musculus 0.0000000002 69
ENSMUST00000055334 Hoxb3-001 protein_coding Mus_musculus 0.000000009 64
ENSMUST00000093944 Hoxb3-002 protein_coding Mus_musculus 0.000000009 64
ENSMUST00000053932 HOXD3-001 nonsense_mediated_decay Mus_musculus 0.0000001 60
ENSMUST00000190553 Hoxd3-008 retained_intron Mus_musculus 0.0000001 60
ENSMUST00000140666 Hoxd3-007 protein_coding Mus_musculus 0.0000001 60
ENSMUST00000047830 Hoxd3-005 protein_coding Mus_musculus 0.0000001 60
ENSMUST00000111982 Hoxd3-004 protein_coding Mus_musculus 0.0000001 60
ENSMUST00000111983 Hoxd3-001 protein_coding Mus_musculus 0.0000001 60
ENSMUST00000114434 Hoxa3-001 protein_coding Mus_musculus 0.0000001 60
ENSMUST00000100523 Hoxb2-001 protein_coding Mus_musculus 0.000006 55
ENSMUST00000182030 Hoxb2-002 retained_intron Mus_musculus 0.000006 55

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