C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cordon-bleu WH2 repeat protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000106078 COBL 9606 - 7:51016212-51316818 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265136 COBL-001 51016212-51316799 protein_coding
  ENST00000395540 COBL-006 51064399-51316818 protein_coding
  ENST00000395542 COBL-201 51016213-51316818 protein_coding
  ENST00000431948 COBL-003 51016212-51190943 protein_coding
  ENST00000441453 COBL-005 51070828-51316764 protein_coding
  ENST00000445054 COBL-002 51016212-51193435 protein_coding
  ENST00000449281 COBL-009 51190998-51316471 protein_coding
  ENST00000452534 COBL-004 51029180-51193589 protein_coding
  ENST00000462395 COBL-007 51017280-51035955 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265136ENST00000395540ENST00000395542ENST00000431948ENST00000441453ENST00000445054ENST00000452534ENST00000462395
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265136 N/A N/A N/A 7.205±0.00 1.169±0.00 1.469±0.00 N/A N/A 2.254±0.00 2.988±2.01 N/A 5.253±0.00 0.509±0.00 0.628±0.00
ENST00000395540 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.113±0.00 3.094±0.00 N/A N/A
ENST00000395542 0.447±0.00 N/A N/A 3.346±0.00 1.080±0.00 N/A N/A N/A 0.044±0.00 N/A N/A 2.495±2.22 1.599±0.75 0.603±0.09
ENST00000431948 0.514±0.00 0.070±0.00 0.833±0.00 4.170±0.00 0.407±0.00 2.275±1.22 N/A 1.639±0.44 2.210±0.00 1.492±0.00 N/A 1.490±0.00 N/A 1.464±0.00
ENST00000441453 N/A N/A 0.871±0.00 N/A 1.010±0.22 0.845±0.00 5.879±5.44 N/A N/A 0.807±0.00 17.571±12.19 N/A N/A 0.378±0.00
ENST00000445054 N/A N/A N/A 4.353±1.19 N/A 0.866±0.00 N/A 3.146±0.36 1.742±0.00 1.461±0.39 N/A 1.100±0.00 0.628±0.19 0.713±0.00
ENST00000452534 N/A 0.117±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.214±0.00 1.519±0.00
ENST00000462395 N/A N/A N/A N/A N/A N/A N/A N/A 0.033±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00072I CIL_00072I_0002 CGP 7:50590063-51316818

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000578 ISS embryonic axis specification
GO:0001726 ISS ruffle
GO:0001757 ISS somite specification
GO:0001843 ISS neural tube closure
GO:0001889 ISS liver development
GO:0003779 IEA actin binding
GO:0003785 ISS actin monomer binding
GO:0005515 IEA protein binding
GO:0005884 ISS actin filament
GO:0005886 ISS plasma membrane
GO:0005938 ISS cell cortex
GO:0016020 ISS membrane
GO:0030041 ISS actin filament polymerization
GO:0030424 ISS axon
GO:0030425 ISS dendrite
GO:0030903 ISS notochord development
GO:0033504 ISS floor plate development
GO:0043025 ISS neuronal cell body
GO:0044294 ISS dendritic growth cone
GO:0044295 ISS axonal growth cone
GO:0048471 ISS perinuclear region of cytoplasm
GO:0048565 ISS digestive tract development
GO:0048669 ISS collateral sprouting in absence of injury
GO:0051639 ISS actin filament network formation
GO:1900006 ISS positive regulation of dendrite development
GO:1900029 IEA positive regulation of ruffle assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091006 cobl cordon-bleu homolog (mouse) protein_coding Danio_rerio
ENSMUSG00000020173 Cobl cordon-bleu WH2 repeat protein_coding Mus_musculus

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