C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cordon-bleu WH2 repeat protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265136 COBL-001 ENSG00000106078 9606 - 7:51016212-51316799 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonLiverLungOvaryPlacentaTestisENST00000265136
Transcript ID Brain Breast Colon Liver Lung Ovary Placenta Testis
ENST00000265136 7.205±0.00 1.169±0.00 1.469±0.00 2.254±0.00 2.988±2.01 5.253±0.00 0.509±0.00 0.628±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00072I CIL_00072I_0002 CGP 7:50590063-51316818

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000578 ISS embryonic axis specification
GO:0001726 ISS ruffle
GO:0001757 ISS somite specification
GO:0001843 ISS neural tube closure
GO:0001889 ISS liver development
GO:0003779 IEA actin binding
GO:0003785 ISS actin monomer binding
GO:0005884 ISS actin filament
GO:0005886 ISS plasma membrane
GO:0005938 ISS cell cortex
GO:0016020 ISS membrane
GO:0030041 ISS actin filament polymerization
GO:0030424 ISS axon
GO:0030425 ISS dendrite
GO:0030903 ISS notochord development
GO:0033504 ISS floor plate development
GO:0043025 ISS neuronal cell body
GO:0044294 ISS dendritic growth cone
GO:0044295 ISS axonal growth cone
GO:0048471 ISS perinuclear region of cytoplasm
GO:0048565 ISS digestive tract development
GO:0048669 ISS collateral sprouting in absence of injury
GO:0051639 ISS actin filament network formation
GO:1900006 ISS positive regulation of dendrite development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109650 Cobl-003 protein_coding Mus_musculus 0 1393
ENSMUST00000109651 Cobl-006 protein_coding Mus_musculus 0 1086
ENSMUST00000172956 Cobl-007 nonsense_mediated_decay Mus_musculus 0 1050
ENSMUST00000046755 Cobl-001 protein_coding Mus_musculus 0 835
ENSMUST00000130572 Cobl-002 retained_intron Mus_musculus 0 800
ENSMUST00000172919 Cobl-009 protein_coding Mus_musculus 0 800
ENSMUST00000174874 Cobl-008 protein_coding Mus_musculus 0 745
ENSMUST00000146067 Cobl-005 protein_coding Mus_musculus 0 381
ENSMUST00000172827 Cobl-010 protein_coding Mus_musculus 7e-31 141

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