C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 28
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000106344 RBM28 9606 - 7:128297685-128343908 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000223073 RBM28-001 128297685-128343908 protein_coding
  ENST00000415472 RBM28-002 128310480-128343870 protein_coding
  ENST00000459726 RBM28-003 128338280-128343908 protein_coding
  ENST00000478061 RBM28-005 128335545-128343874 protein_coding
  ENST00000481788 RBM28-007 128310397-128321425 processed_transcript
  ENST00000487602 RBM28-006 128323559-128337160 nonsense_mediated_decay
  ENST00000488249 RBM28-004 128335547-128337204 retained_intron
  ENST00000495327 RBM28-008 128313088-128314971 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000223073ENST00000415472ENST00000459726ENST00000478061ENST00000481788
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000223073 N/A 1.672±0.00 N/A 0.475±0.16 1.043±0.17 0.651±0.21 0.542±0.27 0.892±0.31 1.463±0.00 0.685±0.29 0.255±0.00 1.651±0.04 0.527±0.29 1.170±0.14
ENST00000415472 3.286±0.00 4.150±0.00 1.282±0.00 1.345±0.43 2.440±1.42 1.856±1.08 2.047±1.38 5.064±0.00 1.792±0.48 2.275±1.39 2.506±0.00 5.116±1.80 3.175±0.35 5.590±0.18
ENST00000459726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.562±0.00 N/A 6.678±0.00
ENST00000478061 N/A N/A N/A N/A N/A N/A N/A 2.869±0.00 N/A N/A N/A N/A N/A N/A
ENST00000481788 N/A N/A N/A N/A N/A N/A 4.308±0.00 N/A N/A N/A N/A N/A 2.343±0.55 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006HQ CIL_0006HQ_0002 CGP 7:128241284-128343908
CIL_0001OF CIL_0001OF_0001 CGP 7:128297685-128361685

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005681 IEA spliceosomal complex
GO:0005730 IDA nucleolus
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025332 rbm28 RNA binding motif protein 28 protein_coding Danio_rerio
ENSMUSG00000029701 Rbm28 RNA binding motif protein 28 protein_coding Mus_musculus

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