C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 28
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029701 Rbm28 10090 - 6:29123573-29165006 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000007993 Rbm28-001 29123573-29165006 protein_coding
  ENSMUST00000164563 Rbm28-006 29125181-29131302 protein_coding
  ENSMUST00000169214 Rbm28-002 29125142-29155091 retained_intron
  ENSMUST00000170473 Rbm28-003 29156680-29160156 retained_intron
  ENSMUST00000170750 Rbm28-005 29137579-29152850 retained_intron
  ENSMUST00000172346 Rbm28-004 29157090-29159931 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000007993ENSMUST00000169214ENSMUST00000170473
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000007993 2.966±0.49 1.214±0.36 6.173±0.91 5.756±1.01 1.277±0.45 1.628±0.81 1.319±0.57 3.236±0.91 3.250±2.38 4.239±1.16 3.570±0.55 4.209±2.31 5.135±1.15 16.588±18.96
ENSMUST00000169214 4.174±0.19 N/A 5.930±1.44 N/A N/A N/A 1.493±0.00 N/A 4.281±2.35 N/A 3.102±0.62 5.116±1.94 8.180±3.75 N/A
ENSMUST00000170473 N/A N/A N/A 7.080±0.00 N/A N/A N/A N/A N/A N/A N/A 16.509±3.62 16.467±9.29 131.706±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006HQ CIL_0006HQ_0003 CGP 6:29060220-29165006
CIL_0001OF CIL_0001OF_0002 CGP 6:29123573-29179584

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005681 IEA spliceosomal complex
GO:0005730 IEA nucleolus
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025332 rbm28 RNA binding motif protein 28 protein_coding Danio_rerio
ENSG00000106344 RBM28 RNA binding motif protein 28 protein_coding Homo_sapiens

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