C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 28
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000223073 RBM28-001 ENSG00000106344 9606 - 7:128297685-128343908 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000223073
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000223073 1.672±0.00 0.475±0.16 1.043±0.17 0.651±0.21 0.542±0.27 0.892±0.31 1.463±0.00 0.685±0.29 0.255±0.00 1.651±0.04 0.527±0.29 1.170±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006HQ CIL_0006HQ_0002 CGP 7:128241284-128343908
CIL_0001OF CIL_0001OF_0001 CGP 7:128297685-128361685

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005681 IEA spliceosomal complex
GO:0005730 IDA nucleolus
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000007993 Rbm28-001 protein_coding Mus_musculus 0 2089
ENSMUST00000169214 Rbm28-002 retained_intron Mus_musculus 0 1400
ENSMUST00000170473 Rbm28-003 retained_intron Mus_musculus 0 549
ENSMUST00000170750 Rbm28-005 retained_intron Mus_musculus 0 529
ENSMUST00000172346 Rbm28-004 retained_intron Mus_musculus 0 383
ENSMUST00000164563 Rbm28-006 protein_coding Mus_musculus 0 255

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