C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001OF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000106344-ENSG00000224940 CGP 9606 7:128297685-128361685
GeneTranscriptPositionBiotype
ENSG00000106344 (RBM28)
RNA binding motif protein 28 		ENST00000223073 (RBM28-001) 128297685-128343908 protein_coding
ENST00000415472 (RBM28-002) 128310480-128343870 protein_coding
ENST00000459726 (RBM28-003) 128338280-128343908 protein_coding
ENST00000478061 (RBM28-005) 128335545-128343874 protein_coding
ENST00000481788 (RBM28-007) 128310397-128321425 processed_transcript
ENST00000487602 (RBM28-006) 128323559-128337160 nonsense_mediated_decay
ENST00000488249 (RBM28-004) 128335547-128337204 retained_intron
ENST00000495327 (RBM28-008) 128313088-128314971 retained_intron
ENSG00000224940 (PRRT4)
proline-rich transmembrane protein 4 		ENST00000446477 (PRRT4-201) 128350326-128361685 protein_coding
ENST00000464607 (PRRT4-005) 128359367-128361629 protein_coding
ENST00000480290 (PRRT4-003) 128350354-128359635 protein_coding
ENST00000489517 (PRRT4-002) 128352117-128361681 protein_coding
ENST00000489835 (PRRT4-001) 128350325-128361604 protein_coding
ENST00000495931 (PRRT4-004) 128359375-128361685 protein_coding
ENST00000535159 (PRRT4-202) 128350856-128361685 protein_coding
ENSG00000242261 (MGC27345)
uncharacterized protein MGC27345 		ENST00000468292 (MGC27345-001) 128306649-128307678 processed_pseudogene
CIL_0001OF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029701-ENSMUSG00000079654 CGP 10090 6:29123573-29179584
GeneTranscriptPositionBiotype
ENSMUSG00000029701 (Rbm28)
RNA binding motif protein 28 		ENSMUST00000007993 (Rbm28-001) 29123573-29165006 protein_coding
ENSMUST00000164563 (Rbm28-006) 29125181-29131302 protein_coding
ENSMUST00000169214 (Rbm28-002) 29125142-29155091 retained_intron
ENSMUST00000170473 (Rbm28-003) 29156680-29160156 retained_intron
ENSMUST00000170750 (Rbm28-005) 29137579-29152850 retained_intron
ENSMUST00000172346 (Rbm28-004) 29157090-29159931 retained_intron
ENSMUSG00000079654 (Prrt4)
proline-rich transmembrane protein 4 		ENSMUST00000159200 (Prrt4-001) 29169232-29179584 protein_coding
ENSMUSG00000095596 (Gm24303)
predicted gene, 24303 		ENSMUST00000178237 (Gm24303-201) 29150554-29150679 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001OF_0001ENSG00000106344ENST00000223073ENST00000415472ENST00000459726ENST00000478061ENST00000481788ENST00000487602ENST00000488249ENST00000495327ENSG00000224940ENST00000446477ENST00000464607ENST00000480290ENST00000489517ENST00000489835ENST00000495931ENST00000535159ENSG00000242261ENST00000468292CIL_0001OF_0002ENSMUSG00000029701ENSMUST00000007993ENSMUST00000164563ENSMUST00000169214ENSMUST00000170473ENSMUST00000170750ENSMUST00000172346ENSMUSG00000079654ENSMUST00000159200ENSMUSG00000095596ENSMUST00000178237
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001OF_0001ENSG00000106344ENST00000223073ENST00000415472ENST00000459726ENST00000478061ENST00000481788ENSG00000224940ENST00000446477ENST00000480290ENST00000489517ENST00000489835ENST00000495931ENST00000535159ENSG00000242261ENST00000468292CIL_0001OF_0002ENSMUSG00000029701ENSMUST00000007993ENSMUST00000169214ENSMUST00000170473ENSMUSG00000079654ENSMUST00000159200ENSMUSG00000095596ENSMUST00000178237
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106344 ENST00000223073 N/A 1.672±0.00 N/A 0.475±0.16 1.043±0.17 0.651±0.21 0.542±0.27 0.892±0.31 1.463±0.00 0.685±0.29 0.255±0.00 1.651±0.04 0.527±0.29 1.170±0.14
ENST00000415472 3.286±0.00 4.150±0.00 1.282±0.00 1.345±0.43 2.440±1.42 1.856±1.08 2.047±1.38 5.064±0.00 1.792±0.48 2.275±1.39 2.506±0.00 5.116±1.80 3.175±0.35 5.590±0.18
ENST00000459726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.562±0.00 N/A 6.678±0.00
ENST00000478061 N/A N/A N/A N/A N/A N/A N/A 2.869±0.00 N/A N/A N/A N/A N/A N/A
ENST00000481788 N/A N/A N/A N/A N/A N/A 4.308±0.00 N/A N/A N/A N/A N/A 2.343±0.55 N/A
ENST00000487602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224940 ENST00000446477 0.176±0.00 N/A N/A 0.173±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480290 N/A 0.116±0.00 N/A 0.379±0.00 4.318±0.00 0.075±0.00 0.194±0.00 N/A 0.086±0.00 N/A 0.202±0.03 0.443±0.00 N/A 0.379±0.28
ENST00000489517 N/A 0.223±0.00 N/A 0.107±0.00 N/A 0.128±0.04 0.051±0.00 N/A N/A 0.124±0.00 N/A 0.172±0.00 N/A N/A
ENST00000489835 N/A N/A N/A N/A N/A 0.269±0.00 N/A N/A N/A 0.135±0.00 N/A 0.390±0.00 0.063±0.00 N/A
ENST00000495931 N/A N/A N/A N/A 1.456±0.00 N/A 0.256±0.00 N/A 0.631±0.00 N/A 0.275±0.00 0.138±0.00 N/A 0.077±0.00
ENST00000535159 N/A 0.049±0.00 N/A N/A 2.575±0.00 N/A N/A N/A N/A N/A N/A 0.351±0.00 N/A N/A
ENSG00000242261 ENST00000468292 3.720±0.00 5.792±0.00 N/A 2.993±0.00 3.868±0.86 2.383±0.00 N/A N/A N/A N/A 1.567±0.00 6.274±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029701 ENSMUST00000007993 2.966±0.49 1.214±0.36 6.173±0.91 5.756±1.01 1.277±0.45 1.628±0.81 1.319±0.57 3.236±0.91 3.250±2.38 4.239±1.16 3.570±0.55 4.209±2.31 5.135±1.15 16.588±18.96
ENSMUST00000164563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169214 4.174±0.19 N/A 5.930±1.44 N/A N/A N/A 1.493±0.00 N/A 4.281±2.35 N/A 3.102±0.62 5.116±1.94 8.180±3.75 N/A
ENSMUST00000170473 N/A N/A N/A 7.080±0.00 N/A N/A N/A N/A N/A N/A N/A 16.509±3.62 16.467±9.29 131.706±0.00
ENSMUST00000170750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172346 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000079654 ENSMUST00000159200 0.883±0.44 1.217±0.34 0.095±0.03 2.374±1.32 0.557±0.41 0.254±0.10 0.236±0.08 0.107±0.04 0.023±0.02 2.287±0.16 0.137±0.06 4.573±1.41 0.070±0.03 0.151±0.08
ENSMUSG00000095596 ENSMUST00000178237 N/A N/A 22.733±3.53 81.738±0.00 N/A N/A N/A N/A 26.950±24.35 699.885±200.10 N/A 18.336±0.00 3.493±0.00 N/A

Loading