C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006HQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000091085-ENSDARG00000025332 CGP 7955 18:10137808-10161450
GeneTranscriptPositionBiotype
ENSDARG00000025332 (rbm28)
RNA binding motif protein 28 		ENSDART00000034817 (rbm28-001) 10140981-10161450 protein_coding
ENSDART00000125587 (rbm28-201) 10141376-10161266 protein_coding
ENSDARG00000091085 (lepa)
leptin a 		ENSDART00000126441 (lepa-001) 10137808-10138401 protein_coding
CIL_0006HQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000174697-ENSG00000106344 CGP 9606 7:128241284-128343908
GeneTranscriptPositionBiotype
ENSG00000106344 (RBM28)
RNA binding motif protein 28 		ENST00000223073 (RBM28-001) 128297685-128343908 protein_coding
ENST00000415472 (RBM28-002) 128310480-128343870 protein_coding
ENST00000459726 (RBM28-003) 128338280-128343908 protein_coding
ENST00000478061 (RBM28-005) 128335545-128343874 protein_coding
ENST00000481788 (RBM28-007) 128310397-128321425 processed_transcript
ENST00000487602 (RBM28-006) 128323559-128337160 nonsense_mediated_decay
ENST00000488249 (RBM28-004) 128335547-128337204 retained_intron
ENST00000495327 (RBM28-008) 128313088-128314971 retained_intron
ENSG00000174697 (LEP)
leptin 		ENST00000308868 (LEP-001) 128241284-128257628 protein_coding
ENSG00000221429 (AC018635.1)
 ENST00000408502 (AC018635.1-201) 128290004-128290091 miRNA
ENSG00000242261 (MGC27345)
uncharacterized protein MGC27345 		ENST00000468292 (MGC27345-001) 128306649-128307678 processed_pseudogene
ENSG00000272915 (RP11-62J1.4)
 ENST00000608625 (RP11-62J1.4-001) 128264526-128264889 lincRNA
CIL_0006HQ_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000059201-ENSMUSG00000029701 CGP 10090 6:29060220-29165006
GeneTranscriptPositionBiotype
ENSMUSG00000029701 (Rbm28)
RNA binding motif protein 28 		ENSMUST00000007993 (Rbm28-001) 29123573-29165006 protein_coding
ENSMUST00000164563 (Rbm28-006) 29125181-29131302 protein_coding
ENSMUST00000169214 (Rbm28-002) 29125142-29155091 retained_intron
ENSMUST00000170473 (Rbm28-003) 29156680-29160156 retained_intron
ENSMUST00000170750 (Rbm28-005) 29137579-29152850 retained_intron
ENSMUST00000172346 (Rbm28-004) 29157090-29159931 retained_intron
ENSMUSG00000059201 (Lep)
leptin 		ENSMUST00000069789 (Lep-001) 29060220-29073877 protein_coding
ENSMUST00000169505 (Lep-002) 29065462-29070972 protein_coding
ENSMUSG00000095596 (Gm24303)
predicted gene, 24303 		ENSMUST00000178237 (Gm24303-201) 29150554-29150679 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006HQ_0001ENSDARG00000025332ENSDART00000034817ENSDART00000125587ENSDARG00000091085ENSDART00000126441CIL_0006HQ_0002ENSG00000106344ENST00000223073ENST00000415472ENST00000459726ENST00000478061ENST00000481788ENST00000487602ENST00000488249ENST00000495327ENSG00000174697ENST00000308868ENSG00000221429ENST00000408502ENSG00000242261ENST00000468292ENSG00000272915ENST00000608625CIL_0006HQ_0003ENSMUSG00000029701ENSMUST00000007993ENSMUST00000164563ENSMUST00000169214ENSMUST00000170473ENSMUST00000170750ENSMUST00000172346ENSMUSG00000059201ENSMUST00000069789ENSMUST00000169505ENSMUSG00000095596ENSMUST00000178237
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006HQ_0001ENSDARG00000025332ENSDART00000034817ENSDART00000125587ENSDARG00000091085ENSDART00000126441CIL_0006HQ_0002ENSG00000106344ENST00000223073ENST00000415472ENST00000459726ENST00000478061ENST00000481788ENSG00000174697ENST00000308868ENSG00000221429ENST00000408502ENSG00000242261ENST00000468292ENSG00000272915ENST00000608625CIL_0006HQ_0003ENSMUSG00000029701ENSMUST00000007993ENSMUST00000169214ENSMUST00000170473ENSMUSG00000059201ENSMUST00000069789ENSMUST00000169505ENSMUSG00000095596ENSMUST00000178237
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000025332 ENSDART00000034817 N/A N/A N/A 3.013±0.76 N/A N/A 3.672±0.32 7.060±2.49 3.132±0.00 N/A 0.799±0.00 N/A N/A N/A
ENSDART00000125587 N/A N/A N/A 1.720±0.65 N/A N/A 1.414±0.46 6.461±0.00 4.740±0.00 N/A 1.733±0.00 N/A N/A N/A
ENSDARG00000091085 ENSDART00000126441 N/A N/A N/A 0.227±0.04 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106344 ENST00000223073 N/A 1.672±0.00 N/A 0.475±0.16 1.043±0.17 0.651±0.21 0.542±0.27 0.892±0.31 1.463±0.00 0.685±0.29 0.255±0.00 1.651±0.04 0.527±0.29 1.170±0.14
ENST00000415472 3.286±0.00 4.150±0.00 1.282±0.00 1.345±0.43 2.440±1.42 1.856±1.08 2.047±1.38 5.064±0.00 1.792±0.48 2.275±1.39 2.506±0.00 5.116±1.80 3.175±0.35 5.590±0.18
ENST00000459726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.562±0.00 N/A 6.678±0.00
ENST00000478061 N/A N/A N/A N/A N/A N/A N/A 2.869±0.00 N/A N/A N/A N/A N/A N/A
ENST00000481788 N/A N/A N/A N/A N/A N/A 4.308±0.00 N/A N/A N/A N/A N/A 2.343±0.55 N/A
ENST00000487602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000174697 ENST00000308868 18.693±0.00 0.257±0.00 N/A 0.045±0.00 180.637±172.66 0.389±0.07 0.676±0.10 0.091±0.00 0.974±0.96 0.180±0.11 0.036±0.00 0.105±0.10 5.835±3.35 0.276±0.16
ENSG00000221429 ENST00000408502 N/A 4.673±0.00 N/A 1.071±0.00 4.185±0.00 N/A 0.990±0.00 0.337±0.00 1.585±0.00 0.357±0.00 N/A 32.340±0.00 N/A 0.609±0.00
ENSG00000242261 ENST00000468292 3.720±0.00 5.792±0.00 N/A 2.993±0.00 3.868±0.86 2.383±0.00 N/A N/A N/A N/A 1.567±0.00 6.274±0.00 N/A N/A
ENSG00000272915 ENST00000608625 N/A 0.055±0.00 N/A 0.125±0.00 N/A 0.105±0.00 N/A N/A N/A N/A N/A N/A N/A 0.164±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029701 ENSMUST00000007993 2.966±0.49 1.214±0.36 6.173±0.91 5.756±1.01 1.277±0.45 1.628±0.81 1.319±0.57 3.236±0.91 3.250±2.38 4.239±1.16 3.570±0.55 4.209±2.31 5.135±1.15 16.588±18.96
ENSMUST00000164563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169214 4.174±0.19 N/A 5.930±1.44 N/A N/A N/A 1.493±0.00 N/A 4.281±2.35 N/A 3.102±0.62 5.116±1.94 8.180±3.75 N/A
ENSMUST00000170473 N/A N/A N/A 7.080±0.00 N/A N/A N/A N/A N/A N/A N/A 16.509±3.62 16.467±9.29 131.706±0.00
ENSMUST00000170750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172346 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000059201 ENSMUST00000069789 372.090±312.67 9.265±2.65 1.451±0.87 0.008±0.01 69.016±4.53 1.021±0.17 0.814±0.21 1.322±0.57 0.013±0.00 1.749±0.62 0.576±0.54 7.751±1.22 0.455±0.45 0.536±0.13
ENSMUST00000169505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A
ENSMUSG00000095596 ENSMUST00000178237 N/A N/A 22.733±3.53 81.738±0.00 N/A N/A N/A N/A 26.950±24.35 699.885±200.10 N/A 18.336±0.00 3.493±0.00 N/A

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