C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: centrosomal protein 41kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000106477 CEP41 9606 - 7:130393771-130442433 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000223208 CEP41-001 130393771-130441237 protein_coding
  ENST00000334451 CEP41-008 130421853-130441024 processed_transcript
  ENST00000343969 CEP41-016 130398739-130440995 protein_coding
  ENST00000469826 CEP41-006 130411165-130440848 protein_coding
  ENST00000471201 CEP41-007 130404599-130441057 nonsense_mediated_decay
  ENST00000472739 CEP41-010 130401933-130426979 protein_coding
  ENST00000475282 CEP41-012 130402695-130417332 protein_coding
  ENST00000477003 CEP41-005 130402669-130442433 protein_coding
  ENST00000480206 CEP41-015 130400268-130402686 retained_intron
  ENST00000482730 CEP41-013 130412019-130426713 retained_intron
  ENST00000484549 CEP41-004 130398729-130441027 nonsense_mediated_decay
  ENST00000485736 CEP41-003 130397508-130401146 retained_intron
  ENST00000489512 CEP41-002 130419034-130441056 protein_coding
  ENST00000492389 CEP41-011 130400780-130426730 protein_coding
  ENST00000495702 CEP41-009 130421435-130441029 processed_transcript
  ENST00000498527 CEP41-014 130410876-130441026 retained_intron
  ENST00000541543 CEP41-201 130393771-130441210 protein_coding
  ENST00000603513 CEP41-017 130398842-130401209 retained_intron
  ENST00000616628 CEP41-202 130419034-130441210 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000223208ENST00000343969ENST00000471201ENST00000477003ENST00000482730ENST00000484549ENST00000485736ENST00000489512ENST00000495702ENST00000498527ENST00000541543
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000223208 0.394±0.00 0.169±0.00 1.916±0.94 0.862±0.00 0.466±0.00 0.060±0.01 N/A N/A 0.714±0.00 N/A 2.938±0.00 0.402±0.00 0.947±0.00
ENST00000343969 1.608±0.00 N/A N/A N/A 1.185±0.00 0.336±0.00 N/A N/A N/A N/A 0.261±0.00 1.494±0.31 8.870±0.00
ENST00000471201 N/A N/A N/A N/A N/A N/A N/A N/A 1.717±0.00 N/A N/A N/A N/A
ENST00000477003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.396±0.00
ENST00000482730 N/A N/A N/A N/A N/A N/A N/A 2.819±0.00 N/A N/A N/A N/A N/A
ENST00000484549 N/A N/A N/A N/A N/A 0.331±0.00 0.197±0.00 N/A N/A N/A N/A N/A 15.185±1.75
ENST00000485736 N/A 0.716±0.00 1.839±0.00 0.860±0.00 0.616±0.00 0.382±0.00 1.503±0.00 0.322±0.00 0.707±0.00 0.149±0.00 0.661±0.45 1.856±0.47 7.675±0.00
ENST00000489512 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.101±0.00 N/A N/A
ENST00000495702 N/A N/A N/A N/A N/A N/A N/A 0.604±0.00 N/A 1.203±0.00 N/A N/A N/A
ENST00000498527 N/A N/A N/A N/A N/A N/A N/A 1.282±0.00 N/A N/A N/A N/A N/A
ENST00000541543 N/A N/A N/A 0.078±0.00 N/A N/A N/A 0.146±0.00 N/A 0.092±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PP CIL_0008PP_0001 VISTA 7:130073108-130674619
CIL_00026Z CIL_00026Z_0001 CGP 7:130380339-130442433
CIL_0006OS CIL_0006OS_0001 CGP 7:130393771-130506296

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0005515 IPI protein binding
GO:0005813 IDA centrosome
GO:0005814 IDA centriole
GO:0005829 TAS cytosol
GO:0005929 IEA cilium
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0018095 ISS protein polyglutamylation
GO:0036064 IDA ciliary basal body
GO:0042384 IMP cilium assembly
GO:0072372 IDA primary cilium

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038500 cep41 centrosomal protein 41 protein_coding Danio_rerio
ENSMUSG00000029790 Cep41 centrosomal protein 41 protein_coding Mus_musculus

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