C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: centrosomal protein 41kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000223208 CEP41-001 ENSG00000106477 9606 - 7:130393771-130441237 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLungOvaryPlacentaTestisENST00000223208
Transcript ID Adipose Adrenal Brain Breast Colon Heart Lung Ovary Placenta Testis
ENST00000223208 0.394±0.00 0.169±0.00 1.916±0.94 0.862±0.00 0.466±0.00 0.060±0.01 0.714±0.00 2.938±0.00 0.402±0.00 0.947±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PP CIL_0008PP_0001 VISTA 7:130073108-130674619
CIL_00026Z CIL_00026Z_0001 CGP 7:130380339-130442433
CIL_0006OS CIL_0006OS_0001 CGP 7:130393771-130506296

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0005515 IPI protein binding
GO:0005813 IDA centrosome
GO:0005814 IDA centriole
GO:0005829 TAS cytosol
GO:0005929 IEA cilium
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0018095 ISS protein polyglutamylation
GO:0036064 IDA ciliary basal body
GO:0042384 IMP cilium assembly
GO:0072372 IDA primary cilium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031810 Cep41-001 protein_coding Mus_musculus 0 1325
ENSMUST00000140211 Cep41-004 nonsense_mediated_decay Mus_musculus 0 1229
ENSMUST00000132763 Cep41-009 processed_transcript Mus_musculus 0 1090
ENSMUST00000115131 Cep41-002 protein_coding Mus_musculus 0 900
ENSMUST00000140252 Cep41-005 processed_transcript Mus_musculus 0 361
ENSMUST00000169422 Cep41-010 protein_coding Mus_musculus 0 359
ENSMUST00000153107 Cep41-008 processed_transcript Mus_musculus 0 353

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