C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006OS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000106477-ENSG00000106484 CGP 9606 7:130393771-130506296
GeneTranscriptPositionBiotype
ENSG00000106477 (CEP41)
centrosomal protein 41kDa 		ENST00000223208 (CEP41-001) 130393771-130441237 protein_coding
ENST00000334451 (CEP41-008) 130421853-130441024 processed_transcript
ENST00000343969 (CEP41-016) 130398739-130440995 protein_coding
ENST00000469826 (CEP41-006) 130411165-130440848 protein_coding
ENST00000471201 (CEP41-007) 130404599-130441057 nonsense_mediated_decay
ENST00000472739 (CEP41-010) 130401933-130426979 protein_coding
ENST00000475282 (CEP41-012) 130402695-130417332 protein_coding
ENST00000477003 (CEP41-005) 130402669-130442433 protein_coding
ENST00000480206 (CEP41-015) 130400268-130402686 retained_intron
ENST00000482730 (CEP41-013) 130412019-130426713 retained_intron
ENST00000484549 (CEP41-004) 130398729-130441027 nonsense_mediated_decay
ENST00000485736 (CEP41-003) 130397508-130401146 retained_intron
ENST00000489512 (CEP41-002) 130419034-130441056 protein_coding
ENST00000492389 (CEP41-011) 130400780-130426730 protein_coding
ENST00000495702 (CEP41-009) 130421435-130441029 processed_transcript
ENST00000498527 (CEP41-014) 130410876-130441026 retained_intron
ENST00000541543 (CEP41-201) 130393771-130441210 protein_coding
ENST00000603513 (CEP41-017) 130398842-130401209 retained_intron
ENST00000616628 (CEP41-202) 130419034-130441210 protein_coding
ENSG00000106484 (MEST)
mesoderm specific transcript 		ENST00000223215 (MEST-001) 130492093-130506292 protein_coding
ENST00000341441 (MEST-002) 130486171-130506292 protein_coding
ENST00000378576 (MEST-004) 130486354-130506292 protein_coding
ENST00000393187 (MEST-201) 130491329-130506296 protein_coding
ENST00000399874 (MEST-007) 130486971-130498179 protein_coding
ENST00000416162 (MEST-003) 130486354-130506292 protein_coding
ENST00000421001 (MEST-009) 130491333-130500807 protein_coding
ENST00000427521 (MEST-006) 130486336-130502720 protein_coding
ENST00000433159 (MEST-008) 130487126-130498451 protein_coding
ENST00000437637 (MEST-011) 130492472-130498206 protein_coding
ENST00000437945 (MEST-005) 130492100-130505353 protein_coding
ENST00000458161 (MEST-012) 130494530-130498477 protein_coding
ENST00000460590 (MEST-010) 130492395-130495547 processed_transcript
ENST00000462132 (MEST-013) 130497166-130502736 processed_transcript
ENST00000463263 (MEST-017) 130498226-130505298 protein_coding
ENST00000475188 (MEST-014) 130497677-130498801 retained_intron
ENST00000488093 (MEST-016) 130498380-130501069 retained_intron
ENST00000494868 (MEST-015) 130498225-130500042 retained_intron
ENSG00000259920 (RP11-2E11.5)
 ENST00000562524 (RP11-2E11.5-001) 130481491-130484392 lincRNA
ENSG00000270823 (MIR335)
microRNA 335 		ENST00000604666 (MIR335-001) 130495794-130498427 antisense
ENSG00000274500 (MESTIT1_3)
MEST intronic transcript 1, antisense RNA conserved region 3 		ENST00000612234 (MESTIT1_3.1-201) 130489868-130489966 misc_RNA
ENSG00000277269 (MESTIT1_1)
MEST intronic transcript 1, antisense RNA conserved region 1 		ENST00000618871 (MESTIT1_1.1-201) 130487483-130487622 misc_RNA
ENSG00000278055 (MESTIT1)
MEST intronic transcript 1, antisense RNA 		ENST00000616328 (MESTIT1-201) 130488304-130488538 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0006OS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029790-ENSMUSG00000051855 CGP 10090 6:30653457-30748455
GeneTranscriptPositionBiotype
ENSMUSG00000025607 (Copg2)
coatomer protein complex, subunit gamma 2 		ENSMUST00000048774 (Copg2-201) 30747554-30896739 protein_coding
ENSMUST00000122833 (Copg2-006) 30858427-30896730 retained_intron
ENSMUST00000131256 (Copg2-002) 30858509-30896710 processed_transcript
ENSMUST00000133916 (Copg2-004) 30858803-30896426 protein_coding
ENSMUST00000134137 (Copg2-003) 30896115-30896748 processed_transcript
ENSMUST00000135230 (Copg2-001) 30858738-30896794 protein_coding
ENSMUST00000151973 (Copg2-005) 30894897-30896437 processed_transcript
ENSMUST00000166192 (Copg2-202) 30824238-30896739 protein_coding
ENSMUSG00000029790 (Cep41)
centrosomal protein 41 		ENSMUST00000031810 (Cep41-001) 30653457-30693749 protein_coding
ENSMUST00000115130 (Cep41-003) 30679088-30693700 protein_coding
ENSMUST00000115131 (Cep41-002) 30654378-30693695 protein_coding
ENSMUST00000132763 (Cep41-009) 30654379-30669355 processed_transcript
ENSMUST00000133373 (Cep41-006) 30666314-30680533 protein_coding
ENSMUST00000140211 (Cep41-004) 30653459-30693693 nonsense_mediated_decay
ENSMUST00000140252 (Cep41-005) 30660982-30693088 processed_transcript
ENSMUST00000146951 (Cep41-007) 30658382-30661369 retained_intron
ENSMUST00000153107 (Cep41-008) 30655532-30656809 processed_transcript
ENSMUST00000169422 (Cep41-010) 30666028-30693676 protein_coding
ENSMUSG00000086542 (Gm13782)
predicted gene 13782 		ENSMUST00000149515 (Gm13782-001) 30673944-30682266 antisense
ENSMUSG00000098260 (Gm27522)
predicted gene, 27522 		ENSMUST00000183949 (Gm27522-201) 30734418-30734647 misc_RNA

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006OS_0001ENSG00000106477ENST00000223208ENST00000343969ENST00000471201ENST00000477003ENST00000482730ENST00000484549ENST00000485736ENST00000489512ENST00000495702ENST00000498527ENST00000541543ENSG00000106484ENST00000223215ENST00000341441ENST00000416162ENST00000437945ENST00000494868ENSG00000259920ENST00000562524ENSG00000270823ENST00000604666ENSG00000274500ENST00000612234ENSG00000277269ENST00000618871ENSG00000278055ENST00000616328CIL_0006OS_0002ENSMUSG00000025607ENSMUST00000048774ENSMUSG00000029790ENSMUST00000031810ENSMUST00000115130ENSMUST00000132763ENSMUST00000133373ENSMUST00000140211ENSMUST00000146951ENSMUST00000153107ENSMUSG00000086542ENSMUST00000149515ENSMUSG00000098260ENSMUST00000183949
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106477 ENST00000223208 0.394±0.00 0.169±0.00 N/A 1.916±0.94 0.862±0.00 0.466±0.00 0.060±0.01 N/A N/A 0.714±0.00 N/A 2.938±0.00 0.402±0.00 0.947±0.00
ENST00000334451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000343969 1.608±0.00 N/A N/A N/A N/A 1.185±0.00 0.336±0.00 N/A N/A N/A N/A 0.261±0.00 1.494±0.31 8.870±0.00
ENST00000469826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471201 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.717±0.00 N/A N/A N/A N/A
ENST00000472739 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475282 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.396±0.00
ENST00000480206 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482730 N/A N/A N/A N/A N/A N/A N/A N/A 2.819±0.00 N/A N/A N/A N/A N/A
ENST00000484549 N/A N/A N/A N/A N/A N/A 0.331±0.00 0.197±0.00 N/A N/A N/A N/A N/A 15.185±1.75
ENST00000485736 N/A 0.716±0.00 N/A 1.839±0.00 0.860±0.00 0.616±0.00 0.382±0.00 1.503±0.00 0.322±0.00 0.707±0.00 0.149±0.00 0.661±0.45 1.856±0.47 7.675±0.00
ENST00000489512 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.101±0.00 N/A N/A
ENST00000492389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495702 N/A N/A N/A N/A N/A N/A N/A N/A 0.604±0.00 N/A 1.203±0.00 N/A N/A N/A
ENST00000498527 N/A N/A N/A N/A N/A N/A N/A N/A 1.282±0.00 N/A N/A N/A N/A N/A
ENST00000541543 N/A N/A N/A N/A 0.078±0.00 N/A N/A N/A 0.146±0.00 N/A 0.092±0.00 N/A N/A N/A
ENST00000603513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616628 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000106484 ENST00000223215 11.140±0.00 17.507±0.00 N/A N/A 25.960±20.76 5.096±1.28 2.225±0.00 5.235±2.02 2.925±0.55 7.527±5.16 N/A 13.039±0.43 213.243±122.37 7.482±0.00
ENST00000341441 N/A N/A N/A N/A N/A N/A N/A N/A 1.988±0.00 N/A N/A 6.744±1.88 N/A N/A
ENST00000378576 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000393187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000399874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416162 N/A N/A N/A N/A N/A N/A 0.918±0.00 2.475±0.00 N/A N/A N/A 3.822±0.00 N/A N/A
ENST00000421001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433159 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437945 N/A N/A 2.890±0.00 N/A N/A N/A N/A 2.592±0.00 N/A N/A 0.584±0.00 N/A N/A N/A
ENST00000458161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462132 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463263 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.511±0.00 N/A N/A N/A
ENSG00000259920 ENST00000562524 0.048±0.00 0.050±0.00 N/A 0.100±0.02 0.280±0.20 0.053±0.01 N/A 0.045±0.00 0.045±0.00 0.015±0.00 N/A 0.043±0.02 0.033±0.02 0.118±0.04
ENSG00000270823 ENST00000604666 N/A N/A 0.802±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000274500 ENST00000612234 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.373±0.00
ENSG00000277269 ENST00000618871 0.271±0.00 N/A N/A 1.300±0.00 0.788±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 9.358±0.00
ENSG00000278055 ENST00000616328 0.117±0.00 N/A N/A 0.118±0.00 0.386±0.00 0.312±0.00 N/A N/A N/A N/A N/A 1.000±0.00 1.223±0.00 0.672±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025607 ENSMUST00000048774 18.204±6.62 11.327±1.29 18.112±2.46 25.899±11.76 8.393±2.23 6.411±0.70 6.163±1.34 7.686±1.35 11.028±5.98 7.836±1.84 3.444±0.51 9.444±2.31 11.698±5.84 4.674±1.38
ENSMUST00000122833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134137 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135230 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029790 ENSMUST00000031810 0.760±0.05 0.101±0.00 1.430±0.46 3.246±2.08 0.410±0.00 0.329±0.17 0.430±0.11 0.481±0.14 1.486±0.83 1.417±0.00 0.135±0.07 1.287±0.34 1.051±0.44 9.201±3.05
ENSMUST00000115130 1.516±0.00 N/A N/A N/A 0.791±0.00 N/A 0.535±0.00 0.932±0.02 0.360±0.00 N/A N/A 2.242±0.93 N/A N/A
ENSMUST00000115131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132763 N/A 0.291±0.00 N/A 0.725±0.00 N/A 0.253±0.08 N/A N/A N/A N/A N/A 0.946±0.10 N/A 5.780±0.86
ENSMUST00000133373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.161±0.00 N/A N/A N/A
ENSMUST00000140211 N/A N/A N/A N/A N/A 0.299±0.00 N/A N/A N/A N/A 0.056±0.00 0.412±0.13 N/A N/A
ENSMUST00000140252 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146951 N/A N/A N/A N/A N/A 0.722±0.00 N/A N/A N/A N/A 0.216±0.00 1.812±0.00 N/A 17.216±0.00
ENSMUST00000153107 N/A 1.411±0.42 N/A N/A 0.411±0.00 1.047±0.30 N/A N/A 0.364±0.00 N/A 0.255±0.01 1.744±0.42 3.079±0.00 45.099±0.00
ENSMUST00000169422 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000086542 ENSMUST00000149515 N/A N/A N/A 0.122±0.00 N/A N/A N/A N/A 0.098±0.04 N/A N/A 0.228±0.01 0.201±0.14 N/A
ENSMUSG00000098260 ENSMUST00000183949 N/A N/A N/A N/A N/A N/A N/A N/A 0.701±0.00 N/A N/A N/A N/A N/A

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