C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil-helix-coiled-coil-helix domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000106554 CHCHD3 9606 - 7:132784868-133082088 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262570 CHCHD3-001 132784868-133082082 protein_coding
  ENST00000423635 CHCHD3-004 132785525-133082070 nonsense_mediated_decay
  ENST00000448878 CHCHD3-003 132784883-133082054 protein_coding
  ENST00000457942 CHCHD3-006 133035749-133082088 nonsense_mediated_decay
  ENST00000466644 CHCHD3-005 132837601-133082057 retained_intron
  ENST00000476546 CHCHD3-002 132784905-133082068 processed_transcript
  ENST00000481152 CHCHD3-008 132973428-133070234 processed_transcript
  ENST00000496427 CHCHD3-007 132785510-133052062 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262570ENST00000448878ENST00000476546ENST00000481152ENST00000496427
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262570 20.819±0.00 16.345±0.00 8.085±0.00 10.055±0.70 21.529±12.83 19.876±3.93 42.268±14.53 16.491±11.76 10.281±1.75 9.420±1.95 43.152±3.34 21.531±5.35 18.549±1.23 18.804±4.06
ENST00000448878 N/A N/A N/A 2.876±0.00 N/A N/A N/A 1.473±0.00 N/A 2.112±0.00 N/A N/A N/A N/A
ENST00000476546 N/A N/A N/A N/A N/A N/A N/A N/A 1.104±0.00 N/A N/A N/A N/A N/A
ENST00000481152 N/A N/A N/A N/A 4.330±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496427 N/A N/A 5.151±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024M CIL_00024M_0002 CGP 7:132123332-133082088
CIL_00024T CIL_00024T_0002 CGP 7:132784868-134066589

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001227 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 ISS mitochondrion
GO:0005743 ISS mitochondrial inner membrane
GO:0006351 IEA transcription, DNA-templated
GO:0007007 IMP inner mitochondrial membrane organization
GO:0008053 IMP mitochondrial fusion
GO:0019902 IDA phosphatase binding
GO:0032947 ISS protein complex scaffold
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032919 chchd3 coiled-coil-helix-coiled-coil-helix domain containing 3 protein_coding Danio_rerio
ENSDARG00000034933 CHCHD3 (2 of 2) coiled-coil-helix-coiled-coil-helix domain containing 3 protein_coding Danio_rerio
ENSMUSG00000053768 Chchd3 coiled-coil-helix-coiled-coil-helix domain containing 3 protein_coding Mus_musculus

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