C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00024M_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000019328-ENSDARG00000032919 CGP 7955 4:14283321-14668941
GeneTranscriptPositionBiotype
ENSDARG00000019328 (plxna4)
plexin A4 		ENSDART00000016230 (plxna4-001) 14283321-14485844 protein_coding
ENSDARG00000032919 (chchd3)
coiled-coil-helix-coiled-coil-helix domain containing 3 		ENSDART00000041420 (chchd3-201) 14555613-14668903 protein_coding
ENSDART00000122520 (chchd3-001) 14555611-14668903 protein_coding
ENSDART00000143317 (chchd3-002) 14666171-14668941 retained_intron
CIL_00024M_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000221866-ENSG00000106554 CGP 9606 7:132123332-133082088
GeneTranscriptPositionBiotype
ENSG00000106554 (CHCHD3)
coiled-coil-helix-coiled-coil-helix domain containing 3 		ENST00000262570 (CHCHD3-001) 132784868-133082082 protein_coding
ENST00000423635 (CHCHD3-004) 132785525-133082070 nonsense_mediated_decay
ENST00000448878 (CHCHD3-003) 132784883-133082054 protein_coding
ENST00000457942 (CHCHD3-006) 133035749-133082088 nonsense_mediated_decay
ENST00000466644 (CHCHD3-005) 132837601-133082057 retained_intron
ENST00000476546 (CHCHD3-002) 132784905-133082068 processed_transcript
ENST00000481152 (CHCHD3-008) 132973428-133070234 processed_transcript
ENST00000496427 (CHCHD3-007) 132785510-133052062 processed_transcript
ENSG00000183470 (FLJ40288)
uncharacterized FLJ40288 		ENST00000332558 (FLJ40288-001) 132648794-132728769 lincRNA
ENST00000573229 (FLJ40288-003) 132659531-132672294 lincRNA
ENSG00000221866 (PLXNA4)
plexin A4 		ENST00000321063 (PLXNA4-201) 132123332-132576564 protein_coding
ENST00000359827 (PLXNA4-001) 132123341-132577301 protein_coding
ENST00000378539 (PLXNA4-002) 132484758-132648688 protein_coding
ENST00000423507 (PLXNA4-004) 132383488-132576470 protein_coding
ENST00000496550 (PLXNA4-005) 132140604-132145507 retained_intron
ENSG00000223436 (AC011625.1)
 ENST00000455442 (AC011625.1-001) 132352334-132367976 antisense
ENSG00000225144 (AC018643.4)
 ENST00000445459 (AC018643.4-001) 132264152-132271269 antisense
ENSG00000225881 (AC009365.4)
 ENST00000436379 (AC009365.4-001) 132758970-132760632 antisense
ENSG00000227197 (AC009518.8)
 ENST00000453078 (AC009518.8-002) 132830693-132849593 antisense
CIL_00024M_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029765-ENSMUSG00000053768 CGP 10090 6:32144268-33060260
GeneTranscriptPositionBiotype
ENSMUSG00000029765 (Plxna4)
plexin A4 		ENSMUST00000115096 (Plxna4-001) 32144268-32588192 protein_coding
ENSMUSG00000053768 (Chchd3)
coiled-coil-helix-coiled-coil-helix domain containing 3 		ENSMUST00000066379 (Chchd3-001) 32792217-33060260 protein_coding
ENSMUST00000115091 (Chchd3-002) 32851443-33060217 protein_coding
ENSMUST00000124436 (Chchd3-003) 32792224-33060236 nonsense_mediated_decay
ENSMUST00000125264 (Chchd3-007) 32792643-32897021 processed_transcript
ENSMUST00000127666 (Chchd3-004) 32803988-33060237 protein_coding
ENSMUST00000129069 (Chchd3-008) 32790976-32892330 protein_coding
ENSMUST00000129654 (Chchd3-010) 32792654-32803992 processed_transcript
ENSMUST00000133375 (Chchd3-006) 32792642-32897028 processed_transcript
ENSMUST00000140446 (Chchd3-009) 32792694-32819692 processed_transcript
ENSMUST00000143206 (Chchd3-005) 32792637-32897071 processed_transcript
ENSMUSG00000084386 (Gm13852)
predicted gene 13852 		ENSMUST00000122350 (Gm13852-001) 32610119-32610360 processed_pseudogene
ENSMUSG00000085847 (Gm14540)
predicted gene 14540 		ENSMUST00000138298 (Gm14540-001) 33038468-33043222 antisense
ENSMUSG00000086675 (Plxna4os2)
plexin A4, opposite strand 2 		ENSMUST00000152538 (Plxna4os2-001) 32451170-32454750 antisense
ENSMUSG00000086763 (Plxna4os1)
plexin A4, opposite strand 1 		ENSMUST00000150314 (Plxna4os1-001) 32511073-32515576 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00024M_0001ENSDARG00000019328ENSDART00000016230ENSDARG00000032919ENSDART00000041420ENSDART00000122520ENSDART00000143317CIL_00024M_0002ENSG00000106554ENST00000262570ENST00000423635ENST00000448878ENST00000457942ENST00000466644ENST00000476546ENST00000481152ENST00000496427ENSG00000183470ENST00000332558ENST00000573229ENSG00000221866ENST00000321063ENST00000359827ENST00000378539ENST00000423507ENST00000496550ENSG00000223436ENST00000455442ENSG00000225144ENST00000445459ENSG00000225881ENST00000436379ENSG00000227197ENST00000453078CIL_00024M_0003ENSMUSG00000029765ENSMUST00000115096ENSMUSG00000053768ENSMUST00000066379ENSMUST00000115091ENSMUST00000124436ENSMUST00000125264ENSMUST00000127666ENSMUST00000129069ENSMUST00000129654ENSMUST00000133375ENSMUST00000140446ENSMUST00000143206ENSMUSG00000084386ENSMUST00000122350ENSMUSG00000085847ENSMUST00000138298ENSMUSG00000086675ENSMUST00000152538ENSMUSG00000086763ENSMUST00000150314
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00024M_0001ENSDARG00000019328ENSDART00000016230ENSDARG00000032919ENSDART00000041420ENSDART00000122520ENSDART00000143317CIL_00024M_0002ENSG00000106554ENST00000262570ENST00000448878ENST00000476546ENST00000481152ENST00000496427ENSG00000183470ENST00000332558ENSG00000221866ENST00000321063ENST00000359827ENST00000423507ENST00000496550ENSG00000223436ENST00000455442ENSG00000225144ENST00000445459ENSG00000225881ENST00000436379ENSG00000227197ENST00000453078CIL_00024M_0003ENSMUSG00000029765ENSMUST00000115096ENSMUSG00000053768ENSMUST00000066379ENSMUST00000124436ENSMUST00000127666ENSMUST00000143206ENSMUSG00000084386ENSMUST00000122350ENSMUSG00000085847ENSMUST00000138298ENSMUSG00000086675ENSMUST00000152538ENSMUSG00000086763ENSMUST00000150314
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000019328 ENSDART00000016230 N/A N/A N/A 8.328±4.60 N/A N/A 0.400±0.13 1.132±0.43 0.371±0.00 N/A 0.745±0.00 N/A N/A N/A
ENSDARG00000032919 ENSDART00000041420 N/A N/A N/A 6.440±2.70 N/A N/A 12.344±16.19 13.302±0.00 N/A N/A 7.833±0.00 N/A N/A N/A
ENSDART00000122520 N/A N/A N/A 3.194±0.00 N/A N/A 2.707±2.94 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000143317 N/A N/A N/A 2.484±0.00 N/A N/A 20.133±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106554 ENST00000262570 20.819±0.00 16.345±0.00 8.085±0.00 10.055±0.70 21.529±12.83 19.876±3.93 42.268±14.53 16.491±11.76 10.281±1.75 9.420±1.95 43.152±3.34 21.531±5.35 18.549±1.23 18.804±4.06
ENST00000423635 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448878 N/A N/A N/A 2.876±0.00 N/A N/A N/A 1.473±0.00 N/A 2.112±0.00 N/A N/A N/A N/A
ENST00000457942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476546 N/A N/A N/A N/A N/A N/A N/A N/A 1.104±0.00 N/A N/A N/A N/A N/A
ENST00000481152 N/A N/A N/A N/A 4.330±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496427 N/A N/A 5.151±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000183470 ENST00000332558 N/A N/A N/A N/A N/A 0.061±0.00 N/A N/A N/A N/A N/A N/A N/A 0.128±0.00
ENST00000573229 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000221866 ENST00000321063 4.986±0.00 0.352±0.00 N/A 1.017±0.00 3.115±2.96 0.445±0.26 N/A 0.293±0.00 0.025±0.00 0.202±0.00 0.138±0.06 0.987±1.09 0.325±0.03 0.329±0.00
ENST00000359827 2.415±0.00 0.171±0.00 0.299±0.00 1.416±0.82 2.125±1.30 1.065±0.00 1.005±0.79 0.172±0.08 0.601±0.00 N/A N/A 0.993±0.64 0.349±0.10 N/A
ENST00000378539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000423507 N/A N/A N/A N/A 0.754±0.00 N/A N/A 0.131±0.00 0.752±0.00 N/A N/A N/A N/A N/A
ENST00000496550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.326±0.00 N/A N/A N/A
ENSG00000223436 ENST00000455442 N/A N/A N/A N/A 0.034±0.00 N/A N/A 0.068±0.00 N/A N/A N/A 0.060±0.01 0.156±0.08 N/A
ENSG00000225144 ENST00000445459 N/A N/A N/A 0.031±0.00 N/A N/A N/A N/A N/A 0.263±0.00 N/A N/A N/A N/A
ENSG00000225881 ENST00000436379 N/A N/A N/A 0.094±0.00 0.565±0.00 N/A N/A 0.186±0.00 N/A N/A N/A N/A N/A 0.361±0.14
ENSG00000227197 ENST00000453078 0.040±0.00 0.053±0.00 N/A 0.117±0.08 0.413±0.29 0.263±0.00 0.224±0.00 N/A N/A 0.123±0.00 N/A 0.136±0.00 N/A 0.110±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029765 ENSMUST00000115096 1.326±0.58 0.913±0.17 1.421±0.59 5.271±1.95 0.337±0.15 0.569±0.05 1.444±0.28 0.735±0.15 0.141±0.05 4.195±0.33 0.355±0.07 2.536±0.63 1.019±1.36 0.281±0.10
ENSMUSG00000053768 ENSMUST00000066379 18.849±5.50 15.415±2.53 25.642±0.30 11.973±3.76 16.580±6.58 10.096±1.80 62.107±2.30 25.204±4.87 29.091±14.57 8.742±1.39 122.011±4.93 12.813±11.68 32.231±10.80 12.480±1.71
ENSMUST00000115091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124436 3.464±0.00 12.191±0.00 N/A N/A N/A 12.211±5.90 N/A 12.668±2.23 15.339±4.63 N/A N/A 4.906±0.88 N/A N/A
ENSMUST00000125264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127666 15.652±3.54 130.003±16.30 N/A 17.110±2.21 27.037±7.77 58.765±11.83 52.207±6.90 38.849±13.68 35.800±13.09 16.974±6.89 N/A 26.097±12.52 21.225±0.00 N/A
ENSMUST00000129069 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129654 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143206 13.620±2.94 N/A N/A 10.965±0.00 29.220±15.76 N/A 46.837±2.60 19.406±0.54 18.194±0.00 8.256±0.00 N/A 10.547±2.50 N/A 72.998±21.29
ENSMUSG00000084386 ENSMUST00000122350 N/A N/A N/A 0.437±0.00 N/A N/A N/A N/A N/A N/A N/A 0.433±0.00 N/A N/A
ENSMUSG00000085847 ENSMUST00000138298 0.146±0.05 0.120±0.04 0.019±0.00 N/A 0.266±0.05 0.359±0.12 0.239±0.06 0.265±0.10 0.125±0.06 0.250±0.02 0.014±0.00 0.193±0.15 0.054±0.08 0.087±0.03
ENSMUSG00000086675 ENSMUST00000152538 0.032±0.02 0.074±0.03 N/A 0.076±0.00 N/A N/A 0.022±0.01 0.031±0.01 0.014±0.01 0.086±0.06 N/A 0.073±0.05 0.026±0.02 0.018±0.00
ENSMUSG00000086763 ENSMUST00000150314 0.350±0.08 0.154±0.10 0.210±0.11 0.181±0.00 0.161±0.06 0.177±0.13 0.147±0.07 0.155±0.07 0.089±0.05 1.389±0.16 0.017±0.01 0.180±0.09 0.064±0.03 0.031±0.02

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