C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil-helix-coiled-coil-helix domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262570 CHCHD3-001 ENSG00000106554 9606 - 7:132784868-133082082 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262570
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262570 20.819±0.00 16.345±0.00 8.085±0.00 10.055±0.70 21.529±12.83 19.876±3.93 42.268±14.53 16.491±11.76 10.281±1.75 9.420±1.95 43.152±3.34 21.531±5.35 18.549±1.23 18.804±4.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024M CIL_00024M_0002 CGP 7:132123332-133082088
CIL_00024T CIL_00024T_0002 CGP 7:132784868-134066589

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001227 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 ISS mitochondrion
GO:0005743 ISS mitochondrial inner membrane
GO:0006351 IEA transcription, DNA-templated
GO:0007007 IMP inner mitochondrial membrane organization
GO:0008053 IMP mitochondrial fusion
GO:0019902 IDA phosphatase binding
GO:0032947 ISS protein complex scaffold
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000066379 Chchd3-001 protein_coding Mus_musculus 0 953
ENSMUST00000115091 Chchd3-002 protein_coding Mus_musculus 0 654
ENSMUST00000127666 Chchd3-004 protein_coding Mus_musculus 0 640
ENSMUST00000124436 Chchd3-003 nonsense_mediated_decay Mus_musculus 0 544
ENSMUST00000143206 Chchd3-005 processed_transcript Mus_musculus 0 483
ENSMUST00000125264 Chchd3-007 processed_transcript Mus_musculus 0 368
ENSMUST00000133375 Chchd3-006 processed_transcript Mus_musculus 0 368
ENSMUST00000129069 Chchd3-008 protein_coding Mus_musculus 0 353

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