C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil-helix-coiled-coil-helix domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000053768 Chchd3 10090 - 6:32790976-33060260 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000066379 Chchd3-001 32792217-33060260 protein_coding
  ENSMUST00000115091 Chchd3-002 32851443-33060217 protein_coding
  ENSMUST00000124436 Chchd3-003 32792224-33060236 nonsense_mediated_decay
  ENSMUST00000125264 Chchd3-007 32792643-32897021 processed_transcript
  ENSMUST00000127666 Chchd3-004 32803988-33060237 protein_coding
  ENSMUST00000129069 Chchd3-008 32790976-32892330 protein_coding
  ENSMUST00000129654 Chchd3-010 32792654-32803992 processed_transcript
  ENSMUST00000133375 Chchd3-006 32792642-32897028 processed_transcript
  ENSMUST00000140446 Chchd3-009 32792694-32819692 processed_transcript
  ENSMUST00000143206 Chchd3-005 32792637-32897071 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000066379ENSMUST00000124436ENSMUST00000127666ENSMUST00000143206
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000066379 18.849±5.50 15.415±2.53 25.642±0.30 11.973±3.76 16.580±6.58 10.096±1.80 62.107±2.30 25.204±4.87 29.091±14.57 8.742±1.39 122.011±4.93 12.813±11.68 32.231±10.80 12.480±1.71
ENSMUST00000124436 3.464±0.00 12.191±0.00 N/A N/A N/A 12.211±5.90 N/A 12.668±2.23 15.339±4.63 N/A N/A 4.906±0.88 N/A N/A
ENSMUST00000127666 15.652±3.54 130.003±16.30 N/A 17.110±2.21 27.037±7.77 58.765±11.83 52.207±6.90 38.849±13.68 35.800±13.09 16.974±6.89 N/A 26.097±12.52 21.225±0.00 N/A
ENSMUST00000143206 13.620±2.94 N/A N/A 10.965±0.00 29.220±15.76 N/A 46.837±2.60 19.406±0.54 18.194±0.00 8.256±0.00 N/A 10.547±2.50 N/A 72.998±21.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024M CIL_00024M_0003 CGP 6:32144268-33060260
CIL_00024T CIL_00024T_0003 CGP 6:32790976-33973979

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0001227 ISS RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0006351 IEA transcription, DNA-templated
GO:0007007 IEA inner mitochondrial membrane organization
GO:0008053 IEA mitochondrial fusion
GO:0019902 ISS phosphatase binding
GO:0032947 IMP protein complex scaffold
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032919 chchd3 coiled-coil-helix-coiled-coil-helix domain containing 3 protein_coding Danio_rerio
ENSDARG00000034933 CHCHD3 (2 of 2) coiled-coil-helix-coiled-coil-helix domain containing 3 protein_coding Danio_rerio
ENSG00000106554 CHCHD3 coiled-coil-helix-coiled-coil-helix domain containing 3 protein_coding Homo_sapiens

Loading