C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromobox homolog 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108468 CBX1 9606 - 17:48070052-48101521 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000225603 CBX1-001 48070052-48101521 protein_coding
  ENST00000393408 CBX1-002 48070052-48101198 protein_coding
  ENST00000402583 CBX1-004 48071499-48101302 protein_coding
  ENST00000444685 CBX1-003 48075089-48100582 protein_coding
  ENST00000495350 CBX1-005 48074926-48101287 protein_coding
  ENST00000581003 CBX1-006 48071472-48101379 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000225603ENST00000393408
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000225603 9.787±0.00 13.616±0.00 2.026±0.00 20.755±13.60 8.157±4.39 13.391±9.82 6.535±4.83 9.194±8.16 3.166±0.67 8.434±6.32 8.404±6.22 24.108±14.92 15.555±1.28 43.445±12.10
ENST00000393408 N/A N/A N/A 6.952±0.00 0.389±0.00 N/A N/A 0.733±0.00 N/A N/A N/A 0.982±0.00 N/A 7.874±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RQ CIL_0007RQ_0001 VISTA 17:47700006-48306250
CIL_0007WA CIL_0007WA_0001 VISTA 17:47751636-48352675
CIL_00097B CIL_00097B_0001 VISTA 17:47849190-48450331
CIL_0004MY CIL_0004MY_0002 CGP 17:48048329-48101521

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000775 IDA chromosome, centromeric region
GO:0000785 IDA chromatin
GO:0001939 IEA female pronucleus
GO:0001940 IEA male pronucleus
GO:0003682 TAS chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005720 TAS nuclear heterochromatin
GO:0005721 IEA pericentric heterochromatin
GO:0005819 IDA spindle
GO:0010369 IEA chromocenter
GO:0019899 IPI enzyme binding
GO:0042802 IEA identical protein binding
GO:0042803 IEA protein homodimerization activity
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:1990226 IPI histone methyltransferase binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004189 cbx1a chromobox homolog 1a (HP1 beta homolog Drosophila) protein_coding Danio_rerio
ENSDARG00000054442 cbx1b chromobox homolog 1b (HP1 beta homolog Drosophila) protein_coding Danio_rerio
ENSMUSG00000018666 Cbx1 chromobox 1 protein_coding Mus_musculus

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