C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromobox homolog 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393408 CBX1-002 ENSG00000108468 9606 - 17:48070052-48101198 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastKidneyOvaryTestisENST00000393408
Transcript ID Brain Breast Kidney Ovary Testis
ENST00000393408 6.952±0.00 0.389±0.00 0.733±0.00 0.982±0.00 7.874±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RQ CIL_0007RQ_0001 VISTA 17:47700006-48306250
CIL_0007WA CIL_0007WA_0001 VISTA 17:47751636-48352675
CIL_00097B CIL_00097B_0001 VISTA 17:47849190-48450331
CIL_0004MY CIL_0004MY_0002 CGP 17:48048329-48101521

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000775 IDA chromosome, centromeric region
GO:0000785 IDA chromatin
GO:0001939 IEA female pronucleus
GO:0001940 IEA male pronucleus
GO:0003682 TAS chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005720 TAS nuclear heterochromatin
GO:0005721 IEA pericentric heterochromatin
GO:0005819 IDA spindle
GO:0010369 IEA chromocenter
GO:0019899 IPI enzyme binding
GO:0042802 IEA identical protein binding
GO:0042803 IEA protein homodimerization activity
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:1990226 IPI histone methyltransferase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000134585 Cbx1-003 nonsense_mediated_decay Mus_musculus 0 1000
ENSMUST00000093943 Cbx1-001 protein_coding Mus_musculus 0 918
ENSMUST00000079702 Cbx1-002 protein_coding Mus_musculus 0 676
ENSMUST00000018810 Cbx1-005 protein_coding Mus_musculus 0 676
ENSMUST00000118932 Gm15211-001 processed_pseudogene Mus_musculus 0 453
ENSMUST00000141257 Cbx1-004 retained_intron Mus_musculus 0 243

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