C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromobox homolog 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000225603 CBX1-001 ENSG00000108468 9606 - 17:48070052-48101521 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000225603
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000225603 9.787±0.00 13.616±0.00 2.026±0.00 20.755±13.60 8.157±4.39 13.391±9.82 6.535±4.83 9.194±8.16 3.166±0.67 8.434±6.32 8.404±6.22 24.108±14.92 15.555±1.28 43.445±12.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RQ CIL_0007RQ_0001 VISTA 17:47700006-48306250
CIL_0007WA CIL_0007WA_0001 VISTA 17:47751636-48352675
CIL_00097B CIL_00097B_0001 VISTA 17:47849190-48450331
CIL_0004MY CIL_0004MY_0002 CGP 17:48048329-48101521

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000775 IDA chromosome, centromeric region
GO:0000785 IDA chromatin
GO:0003682 TAS chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005720 TAS nuclear heterochromatin
GO:0005819 IDA spindle
GO:0019899 IPI enzyme binding
GO:1990226 IPI histone methyltransferase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000093943 Cbx1-001 protein_coding Mus_musculus 0 1083
ENSMUST00000134585 Cbx1-003 nonsense_mediated_decay Mus_musculus 0 1000
ENSMUST00000018810 Cbx1-005 protein_coding Mus_musculus 0 872
ENSMUST00000079702 Cbx1-002 protein_coding Mus_musculus 0 752
ENSMUST00000118932 Gm15211-001 processed_pseudogene Mus_musculus 0 453
ENSMUST00000141257 Cbx1-004 retained_intron Mus_musculus 0 388

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