C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromobox 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018666 Cbx1 10090 + 11:96789127-96808640 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000018810 Cbx1-005 96789127-96803969 protein_coding
  ENSMUST00000079702 Cbx1-002 96789249-96808540 protein_coding
  ENSMUST00000093943 Cbx1-001 96789159-96808640 protein_coding
  ENSMUST00000134585 Cbx1-003 96789137-96808149 nonsense_mediated_decay
  ENSMUST00000141257 Cbx1-004 96789175-96801405 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018810ENSMUST00000079702ENSMUST00000093943ENSMUST00000134585ENSMUST00000141257
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018810 2.244±0.23 16.253±2.97 N/A 3.777±0.00 8.294±6.00 6.408±3.80 1.244±0.22 N/A N/A 5.356±2.44 N/A 14.109±3.13 N/A 1.872±0.07
ENSMUST00000079702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.462±0.00 12.507±0.00
ENSMUST00000093943 5.398±0.00 15.219±3.02 5.850±0.00 11.873±2.60 4.352±0.88 8.222±2.52 1.607±0.00 4.479±0.39 5.638±3.67 5.113±0.14 N/A 11.984±2.29 12.449±2.28 4.112±0.62
ENSMUST00000134585 4.689±1.22 6.446±0.20 10.207±2.26 25.315±3.17 7.720±3.97 5.779±0.83 1.747±0.76 3.463±1.42 7.346±4.81 5.445±1.00 3.574±2.49 12.198±6.12 10.943±5.81 5.605±1.17
ENSMUST00000141257 N/A 65.494±17.12 N/A N/A N/A 9.331±0.00 N/A N/A N/A 7.755±0.00 N/A 35.196±15.20 N/A 18.480±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097B CIL_00097B_0002 VISTA 11:96441475-97042608
CIL_0007WA CIL_0007WA_0002 VISTA 11:96526222-97127190
CIL_0007RQ CIL_0007RQ_0002 VISTA 11:96583318-97187851

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000775 IEA chromosome, centromeric region
GO:0000785 IDA chromatin
GO:0001939 IDA female pronucleus
GO:0001940 IDA male pronucleus
GO:0005515 IPI protein binding
GO:0005721 IDA pericentric heterochromatin
GO:0005819 IEA spindle
GO:0010369 IDA chromocenter
GO:0019899 IEA enzyme binding
GO:0042802 IPI identical protein binding
GO:0042803 IPI protein homodimerization activity
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:1990226 IEA histone methyltransferase binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004189 cbx1a chromobox homolog 1a (HP1 beta homolog Drosophila) protein_coding Danio_rerio
ENSDARG00000054442 cbx1b chromobox homolog 1b (HP1 beta homolog Drosophila) protein_coding Danio_rerio
ENSG00000108468 CBX1 chromobox homolog 1 protein_coding Homo_sapiens

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