C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: UTP6, small subunit (SSU) processome component, homolog (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108651 UTP6 9606 - 17:31860899-31901765 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261708 UTP6-001 31860899-31901765 protein_coding
  ENST00000477128 UTP6-004 31863174-31888221 retained_intron
  ENST00000477860 UTP6-003 31873184-31873844 retained_intron
  ENST00000484661 UTP6-002 31863349-31873948 retained_intron
  ENST00000490218 UTP6-005 31884893-31901340 processed_transcript
  ENST00000579459 UTP6-008 31863174-31868112 protein_coding
  ENST00000579878 UTP6-009 31892148-31901673 retained_intron
  ENST00000581012 UTP6-007 31863173-31873395 protein_coding
  ENST00000583408 UTP6-006 31880181-31901708 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261708ENST00000477128ENST00000484661ENST00000490218ENST00000579878ENST00000581012ENST00000583408
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261708 0.888±0.00 3.625±0.00 N/A 0.698±0.08 1.217±0.37 0.776±0.00 0.531±0.08 2.068±0.00 0.777±0.00 0.716±0.20 N/A 2.275±0.19 1.237±0.14 1.901±0.00
ENST00000477128 N/A 5.152±0.00 N/A 1.471±0.47 1.315±0.00 2.768±1.05 0.756±0.00 2.474±0.00 1.518±0.00 1.431±0.30 4.711±0.00 4.472±1.01 N/A N/A
ENST00000484661 N/A N/A N/A 2.356±0.00 N/A N/A N/A N/A N/A 4.588±1.35 N/A 21.708±13.52 21.063±0.00 36.430±0.00
ENST00000490218 N/A N/A 3.370±0.00 6.547±0.00 6.030±0.00 6.287±0.00 N/A N/A N/A 4.222±0.00 N/A N/A N/A N/A
ENST00000579878 N/A N/A 9.391±0.00 4.878±0.00 8.908±0.00 4.819±0.00 N/A 11.230±0.00 5.570±0.00 10.569±0.00 6.096±0.00 N/A N/A N/A
ENST00000581012 6.515±0.00 N/A N/A N/A 8.580±0.00 5.660±0.00 2.490±0.00 7.828±0.29 3.718±0.00 4.145±0.00 N/A 31.143±0.00 20.274±0.00 18.570±2.16
ENST00000583408 2.188±0.00 7.105±0.00 4.221±0.00 2.213±0.16 3.008±0.01 3.566±0.69 1.640±0.00 N/A 3.448±1.06 2.688±0.13 5.855±0.00 4.109±0.00 N/A 5.207±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000VR CIL_0000VR_0001 CGP 17:31860899-32001045

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005622 IEA intracellular
GO:0005730 IDA nucleolus
GO:0006364 IEA rRNA processing
GO:0006396 IEA RNA processing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035730 utp6 UTP6, small subunit (SSU) processome component, homolog (yeast) protein_coding Danio_rerio
ENSMUSG00000035575 Utp6 UTP6, small subunit (SSU) processome component, homolog (yeast) protein_coding Mus_musculus

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