C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SH3 domain containing 19
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000109686 SH3D19 9606 - 4:151102751-151325632 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000304527 SH3D19-201 151120281-151226508 protein_coding
  ENST00000409252 SH3D19-002 151120284-151226066 protein_coding
  ENST00000409598 SH3D19-001 151120279-151226598 protein_coding
  ENST00000427414 SH3D19-013 151121820-151175552 protein_coding
  ENST00000462257 SH3D19-005 151170533-151175292 processed_transcript
  ENST00000474743 SH3D19-004 151176619-151226453 processed_transcript
  ENST00000478503 SH3D19-003 151120287-151166320 retained_intron
  ENST00000508492 SH3D19-008 151137733-151144404 retained_intron
  ENST00000514013 SH3D19-007 151176625-151227917 processed_transcript
  ENST00000514152 SH3D19-006 151120287-151228030 protein_coding
  ENST00000604030 SH3D19-011 151175500-151325632 processed_transcript
  ENST00000604440 SH3D19-010 151176557-151266246 processed_transcript
  ENST00000604922 SH3D19-012 151102751-151120811 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000409252ENST00000427414ENST00000478503ENST00000514152ENST00000604922
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000409252 21.923±0.00 N/A 33.693±0.00 26.585±0.00 27.985±0.00 11.483±0.00 9.488±0.00 13.659±0.00 7.837±0.00 14.023±0.00 N/A 13.506±0.00
ENST00000427414 N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.490±0.00 24.159±0.00 13.439±0.00
ENST00000478503 N/A 3.384±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514152 N/A N/A N/A N/A 6.443±0.00 N/A 13.589±0.00 12.401±0.00 N/A N/A N/A N/A
ENST00000604922 N/A N/A N/A N/A N/A N/A N/A N/A N/A 729.142±0.00 290.334±34.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LR CIL_0006LR_0002 CGP 4:150581922-151104652
CIL_00079F CIL_00079F_0001 CGP 4:151102751-151325632

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005794 IDA Golgi apparatus
GO:0005829 TAS cytosol
GO:0005886 IDA plasma membrane
GO:0006892 TAS post-Golgi vesicle-mediated transport
GO:0007010 IMP cytoskeleton organization
GO:0022604 IMP regulation of cell morphogenesis
GO:0051044 IMP positive regulation of membrane protein ectodomain proteolysis
GO:0061024 TAS membrane organization
GO:0070064 IPI proline-rich region binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086407 sh3d19 SH3 domain containing 19 protein_coding Danio_rerio
ENSDARG00000088202 sh3d19 SH3 domain containing 19 protein_coding Danio_rerio
ENSMUSG00000028082 Sh3d19 SH3 domain protein D19 protein_coding Mus_musculus

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