C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH3 domain containing 19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409252 SH3D19-002 ENSG00000109686 9606 - 4:151120284-151226066 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000409252
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000409252 21.923±0.00 33.693±0.00 26.585±0.00 27.985±0.00 11.483±0.00 9.488±0.00 13.659±0.00 7.837±0.00 14.023±0.00 13.506±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LR CIL_0006LR_0002 CGP 4:150581922-151104652
CIL_00079F CIL_00079F_0001 CGP 4:151102751-151325632

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005794 IDA Golgi apparatus
GO:0005829 TAS cytosol
GO:0005886 IDA plasma membrane
GO:0006892 TAS post-Golgi vesicle-mediated transport
GO:0007010 IMP cytoskeleton organization
GO:0022604 IMP regulation of cell morphogenesis
GO:0051044 IMP positive regulation of membrane protein ectodomain proteolysis
GO:0061024 TAS membrane organization
GO:0070064 IPI proline-rich region binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182666 Sh3d19-001 protein_coding Mus_musculus 0 3177
ENSMUST00000107664 Sh3d19-201 protein_coding Mus_musculus 0 2736
ENSMUST00000183202 Sh3d19-006 retained_intron Mus_musculus 0 562
ENSMUST00000183119 Sh3d19-005 processed_transcript Mus_musculus 0 392
ENSMUST00000182969 Sh3d19-002 processed_transcript Mus_musculus 0 351
ENSMUST00000182723 Sh3d19-003 processed_transcript Mus_musculus 0 241
ENSMUST00000182399 Sh3d19-004 processed_transcript Mus_musculus 4e-18 99

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