C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000110700 RPS13 9606 - 11:17074389-17077787 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000228140 RPS13-010 17074389-17077666 protein_coding
  ENST00000525634 RPS13-001 17074389-17077787 protein_coding
  ENST00000525828 RPS13-005 17074393-17077668 retained_intron
  ENST00000526895 RPS13-002 17074389-17077706 processed_transcript
  ENST00000527571 RPS13-006 17076709-17077667 retained_intron
  ENST00000528074 RPS13-004 17076955-17077678 retained_intron
  ENST00000531008 RPS13-009 17074389-17075612 retained_intron
  ENST00000531908 RPS13-008 17074389-17076020 retained_intron
  ENST00000533969 RPS13-007 17075531-17077647 protein_coding
  ENST00000534329 RPS13-003 17076825-17077715 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000228140ENST00000525634ENST00000526895
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000228140 198.132±0.00 272.482±0.00 106.411±0.00 197.760±0.00 278.828±0.00 N/A 103.716±0.00 N/A N/A N/A 168.986±0.00 N/A 183.460±0.00
ENST00000525634 158.529±0.00 190.486±0.00 45.730±20.38 104.579±44.67 168.662±109.47 118.218±94.04 135.731±91.03 165.739±83.47 320.043±264.54 310.815±233.65 316.884±303.86 433.968±216.25 116.140±53.06
ENST00000526895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 373.077±77.68 275.713±46.40 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000836 CIL_000836_0001 VISTA 11:16591589-17196198
CIL_0003ZX CIL_0003ZX_0001 CGP 11:16778295-17077787
CIL_0003ZW CIL_0003ZW_0001 CGP 11:17074389-17207983

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003729 IDA mRNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0033119 IDA negative regulation of RNA splicing
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036298 rps13 ribosomal protein S13 protein_coding Danio_rerio
ENSMUSG00000090862 Rps13 ribosomal protein S13 protein_coding Mus_musculus

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