C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000525634 RPS13-001 ENSG00000110700 9606 - 11:17074389-17077787 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000525634
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000525634 158.529±0.00 190.486±0.00 45.730±20.38 104.579±44.67 168.662±109.47 118.218±94.04 135.731±91.03 165.739±83.47 320.043±264.54 310.815±233.65 316.884±303.86 433.968±216.25 116.140±53.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000836 CIL_000836_0001 VISTA 11:16591589-17196198
CIL_0003ZX CIL_0003ZX_0001 CGP 11:16778295-17077787
CIL_0003ZW CIL_0003ZW_0001 CGP 11:17074389-17207983

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003729 IDA mRNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005829 TAS cytosol
GO:0005840 NAS:IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IC:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0033119 IDA negative regulation of RNA splicing
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170953 Rps13-201 protein_coding Mus_musculus 0 577
ENSMUST00000183478 Rps13-ps1-001 processed_pseudogene Mus_musculus 0 556
ENSMUST00000182017 Rps13-ps2-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000117927 Rps13-ps4-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000120338 Gm15483-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000117939 Rps13-ps5-001 processed_pseudogene Mus_musculus 0 460
ENSMUST00000122045 Rps13-ps7-001 processed_pseudogene Mus_musculus 0 267
ENSMUST00000118906 Rps13-ps8-001 processed_pseudogene Mus_musculus 3e-26 122

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