C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000228140 RPS13-010 ENSG00000110700 9606 - 11:17074389-17077666 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyOvaryTestisENST00000228140
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Ovary Testis
ENST00000228140 198.132±0.00 272.482±0.00 106.411±0.00 197.760±0.00 278.828±0.00 103.716±0.00 168.986±0.00 183.460±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000836 CIL_000836_0001 VISTA 11:16591589-17196198
CIL_0003ZX CIL_0003ZX_0001 CGP 11:16778295-17077787
CIL_0003ZW CIL_0003ZW_0001 CGP 11:17074389-17207983

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000183478 Rps13-ps1-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000170953 Rps13-201 protein_coding Mus_musculus 0 372
ENSMUST00000182017 Rps13-ps2-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000117927 Rps13-ps4-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000120338 Gm15483-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000118906 Rps13-ps8-001 processed_pseudogene Mus_musculus 0.0000002 60

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