C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter), member 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000536824 SLC6A12-004 ENSG00000111181 9606 - 12:191068-214120 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainLungPlacentaTestisENST00000536824
Transcript ID Adipose Adrenal Brain Lung Placenta Testis
ENST00000536824 0.189±0.00 0.263±0.00 2.626±0.00 0.333±0.00 0.224±0.00 0.549±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083Y CIL_00083Y_0001 VISTA 12:106900-709490

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005332 IEA gamma-aminobutyric acid:sodium symporter activity
GO:0005886 TAS plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006810 TAS transport
GO:0006811 TAS ion transport
GO:0006836 IEA neurotransmitter transport
GO:0006865 TAS amino acid transport
GO:0007268 TAS synaptic transmission
GO:0007269 TAS neurotransmitter secretion
GO:0015812 IEA gamma-aminobutyric acid transport
GO:0016021 TAS:IEA integral component of membrane
GO:0055085 IEA:TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032200 Slc6a12-002 protein_coding Mus_musculus 0 2010
ENSMUST00000166457 Slc6a12-001 protein_coding Mus_musculus 0 2010
ENSMUST00000171008 Slc6a12-007 protein_coding Mus_musculus 0 1807
ENSMUST00000165456 Slc6a12-008 nonsense_mediated_decay Mus_musculus 0 887
ENSMUST00000170339 Slc6a12-005 retained_intron Mus_musculus 0 850
ENSMUST00000171874 Slc6a12-004 retained_intron Mus_musculus 0 839
ENSMUST00000064580 Slc6a13-001 protein_coding Mus_musculus 0 822
ENSMUST00000170582 Slc6a12-006 retained_intron Mus_musculus 0 678
ENSMUST00000142021 Slc6a13-003 processed_transcript Mus_musculus 0 636
ENSMUST00000163771 Slc6a12-009 nonsense_mediated_decay Mus_musculus 0 492
ENSMUST00000166390 Slc6a12-010 nonsense_mediated_decay Mus_musculus 0 438
ENSMUST00000142419 Slc6a13-004 protein_coding Mus_musculus 0 263
ENSMUST00000168295 Slc6a12-003 protein_coding Mus_musculus 0 200
ENSMUST00000142144 Slc6a13-002 retained_intron Mus_musculus 5e-29 134

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