C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 55
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111364 DDX55 9606 + 12:123602077-123620941 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000238146 DDX55-001 123602099-123620941 protein_coding
  ENST00000354291 DDX55-012 123602130-123616603 nonsense_mediated_decay
  ENST00000421670 DDX55-014 123618016-123620422 protein_coding
  ENST00000536079 DDX55-010 123602143-123610070 retained_intron
  ENST00000538744 DDX55-004 123602128-123620144 protein_coding
  ENST00000539934 DDX55-002 123604873-123618153 retained_intron
  ENST00000540763 DDX55-008 123602128-123610103 nonsense_mediated_decay
  ENST00000541259 DDX55-015 123613215-123619628 processed_transcript
  ENST00000542286 DDX55-003 123602077-123619716 retained_intron
  ENST00000543016 DDX55-013 123616558-123618778 retained_intron
  ENST00000544429 DDX55-011 123602097-123607770 retained_intron
  ENST00000544738 DDX55-009 123602125-123617870 nonsense_mediated_decay
  ENST00000545042 DDX55-007 123602099-123607662 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonKidneyLiverOvaryPlacentaTestisENST00000238146ENST00000421670ENST00000538744ENST00000542286
Transcript ID Bladder Brain Colon Kidney Liver Ovary Placenta Testis
ENST00000238146 N/A 1.759±0.00 N/A 0.994±0.00 1.020±0.00 3.378±2.04 N/A N/A
ENST00000421670 N/A N/A N/A N/A N/A 10.101±0.00 2.634±0.00 5.242±0.00
ENST00000538744 N/A N/A N/A N/A N/A 7.188±0.00 4.988±0.00 4.946±0.00
ENST00000542286 1.260±0.00 N/A 4.799±0.00 1.602±0.00 1.597±0.00 2.038±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003J8 CIL_0003J8_0001 CGP 12:123584531-123620941
CIL_000395 CIL_000395_0001 CGP 12:123602077-123633766

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0016020 IDA membrane
GO:0016787 IEA hydrolase activity
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009864 ddx55 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 protein_coding Danio_rerio
ENSMUSG00000029389 Ddx55 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 protein_coding Mus_musculus

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