C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 55
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029389 Ddx55 10090 + 5:124552864-124569660 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000071057 Ddx55-001 124552864-124569660 protein_coding
  ENSMUST00000111438 Ddx55-002 124552914-124569660 protein_coding
  ENSMUST00000131631 Ddx55-003 124552869-124567955 retained_intron
  ENSMUST00000136067 Ddx55-004 124552896-124560728 processed_transcript
  ENSMUST00000142451 Ddx55-005 124561899-124567875 processed_transcript
  ENSMUST00000144433 Ddx55-006 124552958-124560784 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071057ENSMUST00000111438ENSMUST00000131631ENSMUST00000142451
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071057 2.448±0.83 1.907±0.79 3.073±0.84 4.761±1.32 2.736±0.86 3.197±0.38 0.954±0.14 2.017±0.72 2.504±1.61 2.527±0.47 1.116±0.29 2.977±0.90 3.398±1.17 1.089±0.20
ENSMUST00000111438 N/A N/A N/A 6.520±0.00 N/A N/A N/A N/A N/A N/A N/A 4.561±3.27 6.936±2.03 1.770±0.00
ENSMUST00000131631 2.185±0.37 1.671±0.32 1.912±0.30 3.915±0.44 1.763±0.69 1.879±0.34 0.668±0.11 0.738±0.16 0.940±0.51 1.506±0.27 0.461±0.09 1.993±0.35 1.390±0.17 0.729±0.05
ENSMUST00000142451 2.266±0.00 3.458±0.27 N/A N/A 3.078±0.78 2.508±0.52 N/A 1.029±0.12 0.694±0.17 2.246±0.04 N/A 2.754±0.78 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003J8 CIL_0003J8_0002 CGP 5:124540695-124569660
CIL_000395 CIL_000395_0002 CGP 5:124552864-124579131

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009864 ddx55 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 protein_coding Danio_rerio
ENSG00000111364 DDX55 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 protein_coding Homo_sapiens

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