C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003J8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000086598-ENSG00000111364 CGP 9606 12:123584531-123620941
GeneTranscriptPositionBiotype
ENSG00000086598 (TMED2)
transmembrane emp24 domain trafficking protein 2 		ENST00000262225 (TMED2-001) 123584531-123598577 protein_coding
ENST00000438031 (TMED2-003) 123584533-123590446 protein_coding
ENST00000509052 (TMED2-004) 123585562-123597093 protein_coding
ENST00000543425 (TMED2-006) 123584549-123597342 retained_intron
ENST00000544188 (TMED2-005) 123584598-123586960 retained_intron
ENSG00000111361 (EIF2B1)
eukaryotic translation initiation factor 2B, subunit 1 alpha, 26kDa 		ENST00000424014 (EIF2B1-001) 123620406-123633766 protein_coding
ENST00000452159 (EIF2B1-005) 123630047-123633688 retained_intron
ENST00000534960 (EIF2B1-007) 123622636-123633604 protein_coding
ENST00000537073 (EIF2B1-002) 123625967-123633766 protein_coding
ENST00000539951 (EIF2B1-004) 123621738-123632447 protein_coding
ENST00000543940 (EIF2B1-006) 123630234-123633657 processed_transcript
ENSG00000111364 (DDX55)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 		ENST00000238146 (DDX55-001) 123602099-123620941 protein_coding
ENST00000354291 (DDX55-012) 123602130-123616603 nonsense_mediated_decay
ENST00000421670 (DDX55-014) 123618016-123620422 protein_coding
ENST00000536079 (DDX55-010) 123602143-123610070 retained_intron
ENST00000538744 (DDX55-004) 123602128-123620144 protein_coding
ENST00000539934 (DDX55-002) 123604873-123618153 retained_intron
ENST00000540763 (DDX55-008) 123602128-123610103 nonsense_mediated_decay
ENST00000541259 (DDX55-015) 123613215-123619628 processed_transcript
ENST00000542286 (DDX55-003) 123602077-123619716 retained_intron
ENST00000543016 (DDX55-013) 123616558-123618778 retained_intron
ENST00000544429 (DDX55-011) 123602097-123607770 retained_intron
ENST00000544738 (DDX55-009) 123602125-123617870 nonsense_mediated_decay
ENST00000545042 (DDX55-007) 123602099-123607662 retained_intron
ENSG00000206897 (SNORA9)
Small nucleolar RNA SNORA9 		ENST00000384170 (SNORA9.1-203) 123616708-123616840 snoRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0003J8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029390-ENSMUSG00000029389 CGP 10090 5:124540695-124569660
GeneTranscriptPositionBiotype
ENSMUSG00000029389 (Ddx55)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 		ENSMUST00000071057 (Ddx55-001) 124552864-124569660 protein_coding
ENSMUST00000111438 (Ddx55-002) 124552914-124569660 protein_coding
ENSMUST00000131631 (Ddx55-003) 124552869-124567955 retained_intron
ENSMUST00000136067 (Ddx55-004) 124552896-124560728 processed_transcript
ENSMUST00000142451 (Ddx55-005) 124561899-124567875 processed_transcript
ENSMUST00000144433 (Ddx55-006) 124552958-124560784 processed_transcript
ENSMUSG00000029390 (Tmed2)
transmembrane emp24 domain trafficking protein 2 		ENSMUST00000060226 (Tmed2-001) 124540695-124550506 protein_coding
ENSMUST00000124529 (Tmed2-003) 124541329-124549410 protein_coding
ENSMUST00000135464 (Tmed2-002) 124543080-124550496 protein_coding

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003J8_0001ENSG00000086598ENST00000262225ENST00000438031ENST00000509052ENST00000543425ENST00000544188ENSG00000111361ENST00000424014ENST00000452159ENST00000534960ENST00000537073ENST00000539951ENST00000543940ENSG00000111364ENST00000238146ENST00000354291ENST00000421670ENST00000536079ENST00000538744ENST00000539934ENST00000540763ENST00000541259ENST00000542286ENST00000543016ENST00000544429ENST00000544738ENST00000545042ENSG00000206897ENST00000384170CIL_0003J8_0002ENSMUSG00000029389ENSMUST00000071057ENSMUST00000111438ENSMUST00000131631ENSMUST00000136067ENSMUST00000142451ENSMUST00000144433ENSMUSG00000029390ENSMUST00000060226ENSMUST00000124529ENSMUST00000135464
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003J8_0001ENSG00000086598ENST00000262225ENST00000438031ENST00000543425ENST00000544188ENSG00000111361ENST00000424014ENST00000452159ENST00000534960ENST00000537073ENST00000539951ENSG00000111364ENST00000238146ENST00000421670ENST00000538744ENST00000542286ENSG00000206897ENST00000384170CIL_0003J8_0002ENSMUSG00000029389ENSMUST00000071057ENSMUST00000111438ENSMUST00000131631ENSMUST00000142451ENSMUSG00000029390ENSMUST00000060226ENSMUST00000124529ENSMUST00000135464
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000086598 ENST00000262225 N/A N/A 11.652±0.00 24.223±0.00 46.058±0.00 31.330±0.00 4.378±0.00 46.982±0.00 37.191±0.00 31.665±0.00 N/A 57.392±26.84 30.194±26.47 20.928±0.00
ENST00000438031 N/A N/A N/A N/A N/A N/A 7.479±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000509052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543425 42.044±0.00 15.597±0.00 4.807±0.00 27.340±0.00 45.494±0.00 8.648±0.00 N/A N/A N/A N/A 2.640±0.00 38.779±0.00 27.879±0.00 23.701±12.55
ENST00000544188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 153.189±0.00 144.143±0.00 64.140±0.00
ENSG00000111361 ENST00000424014 2.979±0.00 14.394±0.00 1.114±0.00 6.478±2.55 8.363±1.55 6.540±0.55 1.858±0.00 6.579±3.30 5.655±2.22 4.713±0.67 N/A 11.350±6.09 7.459±1.73 9.839±1.20
ENST00000452159 N/A N/A 4.863±0.00 N/A N/A N/A N/A N/A 8.841±0.00 N/A 7.902±0.00 N/A N/A N/A
ENST00000534960 N/A N/A N/A N/A N/A N/A N/A 7.894±0.00 N/A N/A N/A 9.641±0.00 N/A N/A
ENST00000537073 N/A N/A 1.911±0.00 4.147±0.00 N/A N/A N/A N/A N/A 7.592±0.00 N/A N/A N/A N/A
ENST00000539951 11.236±0.00 N/A N/A N/A 22.006±0.00 12.130±0.00 N/A 18.649±0.00 N/A N/A 9.581±0.00 N/A N/A 24.701±0.00
ENST00000543940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000111364 ENST00000238146 N/A N/A N/A 1.759±0.00 N/A N/A N/A 0.994±0.00 1.020±0.00 N/A N/A 3.378±2.04 N/A N/A
ENST00000354291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.101±0.00 2.634±0.00 5.242±0.00
ENST00000536079 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.188±0.00 4.988±0.00 4.946±0.00
ENST00000539934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540763 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542286 N/A N/A 1.260±0.00 N/A N/A 4.799±0.00 N/A 1.602±0.00 1.597±0.00 N/A N/A 2.038±0.00 N/A N/A
ENST00000543016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000206897 ENST00000384170 0.732±0.00 1.853±0.00 N/A 0.413±0.00 0.390±0.00 N/A N/A N/A N/A N/A N/A 1.011±0.00 N/A 0.695±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029389 ENSMUST00000071057 2.448±0.83 1.907±0.79 3.073±0.84 4.761±1.32 2.736±0.86 3.197±0.38 0.954±0.14 2.017±0.72 2.504±1.61 2.527±0.47 1.116±0.29 2.977±0.90 3.398±1.17 1.089±0.20
ENSMUST00000111438 N/A N/A N/A 6.520±0.00 N/A N/A N/A N/A N/A N/A N/A 4.561±3.27 6.936±2.03 1.770±0.00
ENSMUST00000131631 2.185±0.37 1.671±0.32 1.912±0.30 3.915±0.44 1.763±0.69 1.879±0.34 0.668±0.11 0.738±0.16 0.940±0.51 1.506±0.27 0.461±0.09 1.993±0.35 1.390±0.17 0.729±0.05
ENSMUST00000136067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142451 2.266±0.00 3.458±0.27 N/A N/A 3.078±0.78 2.508±0.52 N/A 1.029±0.12 0.694±0.17 2.246±0.04 N/A 2.754±0.78 N/A N/A
ENSMUST00000144433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029390 ENSMUST00000060226 75.485±9.99 103.680±64.17 92.025±8.98 38.198±23.28 86.565±51.30 165.724±34.85 15.715±2.41 62.039±19.27 84.978±19.35 80.570±16.97 8.059±1.73 162.099±101.53 92.661±66.01 16.887±6.33
ENSMUST00000124529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 43.280±0.00 N/A N/A
ENSMUST00000135464 N/A N/A N/A N/A 22.522±11.82 N/A 15.953±7.80 11.146±0.09 32.322±0.00 N/A 46.616±8.62 47.019±16.91 76.620±12.88 N/A

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