C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 38, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111371 SLC38A1 9606 - 12:46183063-46270017 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000398637 SLC38A1-002 46183063-46269012 protein_coding
  ENST00000439706 SLC38A1-003 46187801-46268997 protein_coding
  ENST00000546519 SLC38A1-008 46268860-46270017 processed_transcript
  ENST00000546893 SLC38A1-006 46188565-46269119 protein_coding
  ENST00000548979 SLC38A1-010 46197378-46198021 retained_intron
  ENST00000549049 SLC38A1-005 46187801-46268995 protein_coding
  ENST00000549633 SLC38A1-004 46198728-46269043 processed_transcript
  ENST00000550173 SLC38A1-009 46229232-46269951 protein_coding
  ENST00000551506 SLC38A1-011 46207583-46268806 processed_transcript
  ENST00000552197 SLC38A1-001 46195725-46267701 protein_coding
  ENST00000612161 SLC38A1-201 46196127-46239895 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000398637ENST00000439706ENST00000546893ENST00000549049ENST00000552197
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000398637 0.898±0.00 4.044±0.00 0.738±0.00 3.799±1.40 1.311±0.69 3.339±0.03 8.549±3.97 1.761±0.00 1.415±0.16 1.663±0.00 8.108±0.00 3.746±2.38 8.213±2.00 1.424±0.00
ENST00000439706 N/A N/A 2.970±0.00 N/A N/A 9.557±0.00 N/A N/A 5.315±0.00 4.130±0.00 N/A 9.525±0.00 N/A N/A
ENST00000546893 N/A N/A N/A 10.875±0.00 7.246±0.00 N/A 7.013±0.00 1.283±0.00 N/A 6.134±0.00 1.475±0.00 N/A N/A N/A
ENST00000549049 N/A N/A N/A N/A 5.868±0.00 N/A N/A N/A N/A N/A 2.088±0.00 N/A N/A N/A
ENST00000552197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.133±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YN CIL_0005YN_0001 CGP 12:45919131-46270017
CIL_0005YO CIL_0005YO_0001 CGP 12:46183063-46372867

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001504 TAS neurotransmitter uptake
GO:0003333 NAS amino acid transmembrane transport
GO:0005283 NAS sodium:amino acid symporter activity
GO:0005886 TAS plasma membrane
GO:0006811 TAS ion transport
GO:0006814 IEA sodium ion transport
GO:0006865 TAS amino acid transport
GO:0006868 IEA glutamine transport
GO:0007268 TAS synaptic transmission
GO:0015175 NAS neutral amino acid transmembrane transporter activity
GO:0015186 IEA L-glutamine transmembrane transporter activity
GO:0015804 NAS neutral amino acid transport
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0030424 IEA axon
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000023169 Slc38a1 solute carrier family 38, member 1 protein_coding Mus_musculus

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