C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 38, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000398637 SLC38A1-002 ENSG00000111371 9606 - 12:46183063-46269012 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000398637
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000398637 0.898±0.00 4.044±0.00 0.738±0.00 3.799±1.40 1.311±0.69 3.339±0.03 8.549±3.97 1.761±0.00 1.415±0.16 1.663±0.00 8.108±0.00 3.746±2.38 8.213±2.00 1.424±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YN CIL_0005YN_0001 CGP 12:45919131-46270017
CIL_0005YO CIL_0005YO_0001 CGP 12:46183063-46372867

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001504 TAS neurotransmitter uptake
GO:0003333 NAS amino acid transmembrane transport
GO:0005283 NAS sodium:amino acid symporter activity
GO:0005886 TAS plasma membrane
GO:0006811 TAS ion transport
GO:0006814 IEA sodium ion transport
GO:0006865 TAS amino acid transport
GO:0007268 TAS synaptic transmission
GO:0015175 NAS neutral amino acid transmembrane transporter activity
GO:0015804 NAS neutral amino acid transport
GO:0016021 NAS integral component of membrane
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100262 Slc38a1-203 protein_coding Mus_musculus 7e-38 165
ENSMUST00000088454 Slc38a1-202 protein_coding Mus_musculus 7e-38 165
ENSMUST00000088452 Slc38a1-201 protein_coding Mus_musculus 7e-38 165

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