C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 38, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023169 Slc38a1 10090 - 15:96571418-96642913 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000088452 Slc38a1-201 96571418-96642913 protein_coding
  ENSMUST00000088454 Slc38a1-202 96571418-96642343 protein_coding
  ENSMUST00000100262 Slc38a1-203 96571418-96641962 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000088452ENSMUST00000088454ENSMUST00000100262
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000088452 3.382±3.18 1.387±0.62 2.978±0.03 13.603±3.00 5.066±2.10 5.197±0.43 1.146±0.08 0.428±0.13 1.842±1.81 3.251±0.55 0.440±0.24 11.919±3.65 3.690±0.12 0.310±0.11
ENSMUST00000088454 3.060±1.99 1.529±0.00 2.637±0.37 7.664±1.43 2.643±2.21 4.493±1.32 1.270±0.52 0.672±0.16 0.970±0.87 1.470±0.29 0.090±0.01 4.865±2.97 26.322±9.62 0.227±0.15
ENSMUST00000100262 2.847±0.04 1.041±0.30 0.943±0.12 3.902±0.99 1.583±0.52 2.110±0.18 0.388±0.06 0.221±0.02 0.537±0.32 0.874±0.14 N/A 3.210±0.67 5.386±0.47 0.104±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YN CIL_0005YN_0002 CGP 15:96411698-96642913
CIL_0005YO CIL_0005YO_0002 CGP 15:96571418-96699698

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IDA plasma membrane
GO:0006814 IEA sodium ion transport
GO:0006868 IDA glutamine transport
GO:0015186 IDA L-glutamine transmembrane transporter activity
GO:0015293 IEA symporter activity
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0030424 IDA axon
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000111371 SLC38A1 solute carrier family 38, member 1 protein_coding Homo_sapiens

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