C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: replication factor C (activator 1) 5, 36.5kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111445 RFC5 9606 + 12:118013588-118033130 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000392542 RFC5-001 118016722-118032234 protein_coding
  ENST00000420967 RFC5-004 118016704-118022314 protein_coding
  ENST00000449641 RFC5-006 118013588-118024981 protein_coding
  ENST00000454402 RFC5-002 118016710-118031792 protein_coding
  ENST00000472603 RFC5-005 118024916-118027392 retained_intron
  ENST00000484086 RFC5-007 118016704-118020960 protein_coding
  ENST00000535092 RFC5-008 118016729-118019754 protein_coding
  ENST00000537315 RFC5-003 118016701-118024996 protein_coding
  ENST00000543153 RFC5-009 118026890-118033130 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderOvaryPlacentaTestisENST00000392542ENST00000454402
Transcript ID Adrenal Bladder Ovary Placenta Testis
ENST00000392542 3.787±0.00 0.829±0.00 4.599±0.17 N/A N/A
ENST00000454402 N/A N/A 8.360±0.00 4.874±1.85 4.173±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001QL CIL_0001QL_0002 CGP 12:118013588-118062430

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000722 TAS telomere maintenance via recombination
GO:0000723 TAS telomere maintenance
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005654 TAS nucleoplasm
GO:0005663 IDA DNA replication factor C complex
GO:0006260 NAS:IEA DNA replication
GO:0006271 TAS DNA strand elongation involved in DNA replication
GO:0006281 NAS:IEA DNA repair
GO:0006283 TAS transcription-coupled nucleotide-excision repair
GO:0006289 TAS nucleotide-excision repair
GO:0006297 TAS nucleotide-excision repair, DNA gap filling
GO:0006310 IEA DNA recombination
GO:0009378 IEA four-way junction helicase activity
GO:0019899 NAS enzyme binding
GO:0032201 TAS telomere maintenance via semi-conservative replication

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035634 rfc5 replication factor C (activator 1) 5 protein_coding Danio_rerio
ENSMUSG00000029363 Rfc5 replication factor C (activator 1) 5 protein_coding Mus_musculus

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