C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: replication factor C (activator 1) 5, 36.5kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392542 RFC5-001 ENSG00000111445 9606 + 12:118016722-118032234 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderOvaryENST00000392542
Transcript ID Adrenal Bladder Ovary
ENST00000392542 3.787±0.00 0.829±0.00 4.599±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001QL CIL_0001QL_0002 CGP 12:118013588-118062430

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000722 TAS telomere maintenance via recombination
GO:0000723 TAS telomere maintenance
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005654 TAS nucleoplasm
GO:0005663 IDA DNA replication factor C complex
GO:0006260 NAS:IEA DNA replication
GO:0006271 TAS DNA strand elongation involved in DNA replication
GO:0006281 NAS:IEA DNA repair
GO:0006283 TAS transcription-coupled nucleotide-excision repair
GO:0006289 TAS nucleotide-excision repair
GO:0006297 TAS nucleotide-excision repair, DNA gap filling
GO:0006310 IEA DNA recombination
GO:0009378 IEA four-way junction helicase activity
GO:0019899 NAS enzyme binding
GO:0032201 TAS telomere maintenance via semi-conservative replication

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086461 Rfc5-001 protein_coding Mus_musculus 0 1142
ENSMUST00000121383 Gm12870-001 processed_pseudogene Mus_musculus 0 1035
ENSMUST00000150962 Rfc5-002 retained_intron Mus_musculus 0 837
ENSMUST00000126262 Rfc5-004 retained_intron Mus_musculus 0 717
ENSMUST00000111953 Rfc5-003 protein_coding Mus_musculus 0 250

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